Variant report
| Variant | rs34564821 |
|---|---|
| Chromosome Location | chr10:45616530-45616531 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C10orf25-2 | chr10:45616492-45616619 | NONHSAT013063 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12569983 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12570593 | 1.00[AMR][1000 genomes] |
| rs12572281 | 1.00[EUR][1000 genomes] |
| rs12573085 | 1.00[EUR][1000 genomes] |
| rs12573214 | 1.00[EUR][1000 genomes] |
| rs12573617 | 1.00[EUR][1000 genomes] |
| rs12573631 | 1.00[EUR][1000 genomes] |
| rs3740100 | 1.00[EUR][1000 genomes] |
| rs3824611 | 1.00[EUR][1000 genomes] |
| rs55648726 | 0.82[ASN][1000 genomes] |
| rs60197913 | 0.82[ASN][1000 genomes] |
| rs73291619 | 0.82[ASN][1000 genomes] |
| rs7907860 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831848 | chr10:45490176-45667670 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2750897 | chr10:45550145-45820136 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv947903 | chr10:45598715-45657182 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
