Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45495502..45498143-chr10:45727640..45729872,2	K562	blood:

Variant related genes	Relation type
ENSG00000165512	Chromatin interaction
ENSG00000165511	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10159580	1.00[CHB][hapmap]
rs10900197	1.00[CHB][hapmap]
rs11239396	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239398	0.83[EUR][1000 genomes]
rs11239436	1.00[CHB][hapmap]
rs11239437	1.00[CHB][hapmap]
rs11239501	1.00[CHB][hapmap]
rs11239515	1.00[CHB][hapmap]
rs11239516	1.00[CHB][hapmap]
rs1339746	1.00[CHB][hapmap]
rs17157583	0.83[EUR][1000 genomes]
rs17157619	0.83[EUR][1000 genomes]
rs17157697	1.00[CHB][hapmap]
rs17444064	1.00[CHB][hapmap]
rs17520779	0.80[EUR][1000 genomes]
rs1815626	0.83[EUR][1000 genomes]
rs2211163	1.00[CHB][hapmap]
rs7085353	1.00[CHB][hapmap]
rs72784518	0.83[EUR][1000 genomes]
rs7895871	0.82[EUR][1000 genomes]
rs7898796	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv2595492	chr10:45728107-45732276	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12354802	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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