Variant report

Variant	rs11239515
Chromosome Location	chr10:45902055-45902056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45898269..45903798-chr10:45904032..45907291,6	K562	blood:
2	chr10:45866237..45868097-chr10:45900340..45902647,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10159580	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10508894	1.00[ASN][1000 genomes]
rs10793613	1.00[ASN][1000 genomes]
rs10900195	1.00[ASN][1000 genomes]
rs10900197	1.00[CHB][hapmap]
rs10900200	1.00[ASN][1000 genomes]
rs10900209	1.00[ASN][1000 genomes]
rs10900215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11239402	1.00[ASN][1000 genomes]
rs11239409	1.00[ASN][1000 genomes]
rs11239417	1.00[ASN][1000 genomes]
rs11239420	1.00[ASN][1000 genomes]
rs11239422	1.00[ASN][1000 genomes]
rs11239423	1.00[ASN][1000 genomes]
rs11239427	1.00[ASN][1000 genomes]
rs11239428	1.00[ASN][1000 genomes]
rs11239429	1.00[ASN][1000 genomes]
rs11239430	1.00[ASN][1000 genomes]
rs11239432	1.00[ASN][1000 genomes]
rs11239434	1.00[ASN][1000 genomes]
rs11239435	1.00[ASN][1000 genomes]
rs11239436	1.00[CHB][hapmap]
rs11239437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11239452	1.00[ASN][1000 genomes]
rs11239480	1.00[ASN][1000 genomes]
rs11239482	1.00[ASN][1000 genomes]
rs11239496	1.00[ASN][1000 genomes]
rs11239501	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239506	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239512	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239516	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239519	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239520	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239523	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239524	0.85[EUR][1000 genomes]
rs11239573	1.00[CHB][hapmap]
rs11511611	1.00[ASN][1000 genomes]
rs11522530	1.00[ASN][1000 genomes]
rs11522531	1.00[ASN][1000 genomes]
rs11522532	1.00[ASN][1000 genomes]
rs11523406	1.00[ASN][1000 genomes]
rs11523407	1.00[ASN][1000 genomes]
rs11523864	1.00[ASN][1000 genomes]
rs11523866	1.00[ASN][1000 genomes]
rs12146275	1.00[ASN][1000 genomes]
rs12250005	1.00[ASN][1000 genomes]
rs12256027	1.00[ASN][1000 genomes]
rs12268890	1.00[ASN][1000 genomes]
rs12355274	1.00[ASN][1000 genomes]
rs12355931	1.00[CHB][hapmap]
rs12357069	1.00[ASN][1000 genomes]
rs12358110	1.00[ASN][1000 genomes]
rs12358817	1.00[ASN][1000 genomes]
rs12359547	1.00[ASN][1000 genomes]
rs12359672	1.00[ASN][1000 genomes]
rs1529828	1.00[ASN][1000 genomes]
rs1529829	1.00[ASN][1000 genomes]
rs17157697	1.00[CHB][hapmap]
rs17443340	1.00[ASN][1000 genomes]
rs17444064	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521948	1.00[ASN][1000 genomes]
rs1968475	1.00[ASN][1000 genomes]
rs28485654	1.00[ASN][1000 genomes]
rs28688874	1.00[ASN][1000 genomes]
rs2871740	1.00[ASN][1000 genomes]
rs41526545	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55789336	0.89[EUR][1000 genomes]
rs55837212	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55866086	0.97[EUR][1000 genomes]
rs55963543	1.00[ASN][1000 genomes]
rs56071381	0.98[EUR][1000 genomes]
rs6593484	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085353	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7098434	1.00[ASN][1000 genomes]
rs72784536	1.00[ASN][1000 genomes]
rs72784538	1.00[ASN][1000 genomes]
rs72784571	1.00[ASN][1000 genomes]
rs72786508	1.00[ASN][1000 genomes]
rs72788095	1.00[ASN][1000 genomes]
rs72788096	1.00[ASN][1000 genomes]
rs72788101	1.00[ASN][1000 genomes]
rs72788102	1.00[ASN][1000 genomes]
rs72789705	1.00[ASN][1000 genomes]
rs72789735	1.00[ASN][1000 genomes]
rs72796464	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs748126	1.00[ASN][1000 genomes]
rs748127	1.00[ASN][1000 genomes]
rs7907779	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664826	1.00[ASN][1000 genomes]
rs9731035	1.00[ASN][1000 genomes]
rs9733175	1.00[ASN][1000 genomes]
rs9733422	1.00[ASN][1000 genomes]
rs9733444	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv3349621	chr10:45882995-45906254	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11239515	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45871400-45904600	Weak transcription	Gastric	stomach
2	chr10:45884000-45907400	Weak transcription	Spleen	Spleen
3	chr10:45891600-45905200	Weak transcription	Pancreas	Pancrea
4	chr10:45891600-45907000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:45891600-45914200	Weak transcription	Thymus	Thymus
6	chr10:45892000-45907000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:45894400-45912800	Weak transcription	Placenta	Placenta
8	chr10:45899400-45914000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:45900000-45907000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:45900000-45913000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:45900200-45908600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:45900400-45903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:45900800-45904000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:45901200-45908400	Strong transcription	Primary B cells from cord blood	blood
15	chr10:45901400-45904600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:45901600-45902400	Weak transcription	K562	blood
17	chr10:45901600-45903200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:45901600-45903600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:45901600-45903600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:45901600-45904400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:45901600-45913200	Weak transcription	Primary hematopoietic stem cells	blood

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