Variant report
| Variant | rs28485654 |
|---|---|
| Chromosome Location | chr10:45826344-45826345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:92)
| rs_ID | r2[population] |
|---|---|
| rs10159580 | 1.00[ASN][1000 genomes] |
| rs10508894 | 1.00[ASN][1000 genomes] |
| rs10793613 | 1.00[ASN][1000 genomes] |
| rs10900195 | 1.00[ASN][1000 genomes] |
| rs10900200 | 1.00[ASN][1000 genomes] |
| rs10900209 | 1.00[ASN][1000 genomes] |
| rs11239398 | 1.00[ASN][1000 genomes] |
| rs11239402 | 1.00[ASN][1000 genomes] |
| rs11239409 | 1.00[ASN][1000 genomes] |
| rs11239417 | 1.00[ASN][1000 genomes] |
| rs11239420 | 1.00[ASN][1000 genomes] |
| rs11239422 | 1.00[ASN][1000 genomes] |
| rs11239423 | 1.00[ASN][1000 genomes] |
| rs11239427 | 1.00[ASN][1000 genomes] |
| rs11239428 | 1.00[ASN][1000 genomes] |
| rs11239429 | 1.00[ASN][1000 genomes] |
| rs11239430 | 1.00[ASN][1000 genomes] |
| rs11239432 | 1.00[ASN][1000 genomes] |
| rs11239434 | 1.00[ASN][1000 genomes] |
| rs11239435 | 1.00[ASN][1000 genomes] |
| rs11239437 | 1.00[ASN][1000 genomes] |
| rs11239452 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11239480 | 1.00[ASN][1000 genomes] |
| rs11239482 | 1.00[ASN][1000 genomes] |
| rs11239496 | 1.00[ASN][1000 genomes] |
| rs11239501 | 1.00[ASN][1000 genomes] |
| rs11239506 | 1.00[ASN][1000 genomes] |
| rs11239512 | 1.00[ASN][1000 genomes] |
| rs11239515 | 1.00[ASN][1000 genomes] |
| rs11239516 | 1.00[ASN][1000 genomes] |
| rs11239517 | 1.00[ASN][1000 genomes] |
| rs11239519 | 1.00[ASN][1000 genomes] |
| rs11239520 | 1.00[ASN][1000 genomes] |
| rs11511611 | 1.00[ASN][1000 genomes] |
| rs11522530 | 1.00[ASN][1000 genomes] |
| rs11522531 | 1.00[ASN][1000 genomes] |
| rs11522532 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11523406 | 1.00[ASN][1000 genomes] |
| rs11523407 | 1.00[ASN][1000 genomes] |
| rs11523864 | 1.00[ASN][1000 genomes] |
| rs11523866 | 1.00[ASN][1000 genomes] |
| rs12146275 | 1.00[ASN][1000 genomes] |
| rs12250005 | 1.00[ASN][1000 genomes] |
| rs12256027 | 1.00[ASN][1000 genomes] |
| rs12268890 | 1.00[ASN][1000 genomes] |
| rs12355274 | 1.00[ASN][1000 genomes] |
| rs12355722 | 0.83[AFR][1000 genomes] |
| rs12357069 | 1.00[ASN][1000 genomes] |
| rs12358110 | 1.00[ASN][1000 genomes] |
| rs12358817 | 1.00[ASN][1000 genomes] |
| rs12359547 | 1.00[ASN][1000 genomes] |
| rs12359672 | 1.00[ASN][1000 genomes] |
| rs12360419 | 0.82[AFR][1000 genomes] |
| rs1529828 | 1.00[ASN][1000 genomes] |
| rs1529829 | 1.00[ASN][1000 genomes] |
| rs17157583 | 1.00[ASN][1000 genomes] |
| rs17157619 | 1.00[ASN][1000 genomes] |
| rs17443340 | 1.00[ASN][1000 genomes] |
| rs17444064 | 1.00[ASN][1000 genomes] |
| rs17520779 | 1.00[ASN][1000 genomes] |
| rs17521948 | 1.00[ASN][1000 genomes] |
| rs1815626 | 1.00[ASN][1000 genomes] |
| rs1968475 | 1.00[ASN][1000 genomes] |
| rs28570111 | 0.87[AFR][1000 genomes] |
| rs28688874 | 1.00[ASN][1000 genomes] |
| rs2871740 | 1.00[ASN][1000 genomes] |
| rs41526545 | 1.00[ASN][1000 genomes] |
| rs55963543 | 1.00[ASN][1000 genomes] |
| rs6593484 | 1.00[ASN][1000 genomes] |
| rs7085353 | 1.00[ASN][1000 genomes] |
| rs7098434 | 1.00[ASN][1000 genomes] |
| rs7098888 | 1.00[ASN][1000 genomes] |
| rs72784518 | 1.00[ASN][1000 genomes] |
| rs72784536 | 1.00[ASN][1000 genomes] |
| rs72784538 | 1.00[ASN][1000 genomes] |
| rs72784571 | 1.00[ASN][1000 genomes] |
| rs72786508 | 1.00[ASN][1000 genomes] |
| rs72788095 | 1.00[ASN][1000 genomes] |
| rs72788096 | 1.00[ASN][1000 genomes] |
| rs72788101 | 1.00[ASN][1000 genomes] |
| rs72788102 | 1.00[ASN][1000 genomes] |
| rs72789705 | 1.00[ASN][1000 genomes] |
| rs72789735 | 1.00[ASN][1000 genomes] |
| rs748126 | 1.00[ASN][1000 genomes] |
| rs748127 | 1.00[ASN][1000 genomes] |
| rs7898796 | 1.00[ASN][1000 genomes] |
| rs7907779 | 1.00[ASN][1000 genomes] |
| rs9664826 | 1.00[ASN][1000 genomes] |
| rs9731035 | 1.00[ASN][1000 genomes] |
| rs9733175 | 1.00[ASN][1000 genomes] |
| rs9733422 | 1.00[ASN][1000 genomes] |
| rs9733444 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895105 | chr10:45636867-45928822 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv430166 | chr10:45668894-46148794 | Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv993428 | chr10:45742877-46224333 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45826000-45826600 | Active TSS | Pancreatic Islets | Pancreatic Islet |
| 2 | chr10:45826200-45826600 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
