Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10159580	0.87[EUR][1000 genomes]
rs10793613	0.87[EUR][1000 genomes]
rs10900195	0.87[EUR][1000 genomes]
rs10900200	0.87[EUR][1000 genomes]
rs11239432	0.87[EUR][1000 genomes]
rs11239434	0.86[EUR][1000 genomes]
rs11239435	0.87[EUR][1000 genomes]
rs11239437	0.87[EUR][1000 genomes]
rs11239452	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11239496	0.81[EUR][1000 genomes]
rs11522532	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11523407	0.89[EUR][1000 genomes]
rs11523866	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12250005	0.87[EUR][1000 genomes]
rs12268890	0.87[EUR][1000 genomes]
rs12357069	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12358110	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12360419	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1529828	0.86[EUR][1000 genomes]
rs1529829	0.86[EUR][1000 genomes]
rs17443340	0.83[EUR][1000 genomes]
rs17521948	0.87[EUR][1000 genomes]
rs1968475	0.85[EUR][1000 genomes]
rs28485654	0.83[AFR][1000 genomes]
rs28570111	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28688874	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55963543	0.87[EUR][1000 genomes]
rs7085353	0.87[EUR][1000 genomes]
rs72786508	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72788095	0.86[EUR][1000 genomes]
rs72788096	0.86[EUR][1000 genomes]
rs72789735	0.81[EUR][1000 genomes]
rs9664826	0.86[EUR][1000 genomes]
rs9733175	0.86[EUR][1000 genomes]
rs9733422	0.80[EUR][1000 genomes]
rs9733444	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12355722	ALOX5	Cis_1M	lymphoblastoid	RTeQTL
rs12355722	OR13A1	cis	lung	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45825600-45825800	Enhancers	K562	blood

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