Variant report

Variant	rs12246467
Chromosome Location	chr10:18469264-18469265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11012860	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242962	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252650	0.83[YRI][hapmap]
rs12261030	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263596	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392648	1.00[AMR][1000 genomes]
rs9663417	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18466600-18469400	Enhancers	Primary hematopoietic stem cells	blood
2	chr10:18466800-18469600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:18467200-18470200	Enhancers	Fetal Stomach	stomach
4	chr10:18467600-18469400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:18467600-18469600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:18467600-18469600	Enhancers	Fetal Muscle Leg	muscle
7	chr10:18467600-18469600	Enhancers	NHLF	lung
8	chr10:18467600-18469800	Enhancers	Fetal Brain Male	brain
9	chr10:18467600-18471200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:18467600-18471200	Enhancers	Ovary	ovary
11	chr10:18468200-18469400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:18468200-18469600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:18468400-18469400	Active TSS	Stomach Smooth Muscle	stomach
14	chr10:18468400-18469600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:18468400-18469600	Flanking Active TSS	Fetal Heart	heart
16	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
17	chr10:18468600-18469400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:18468600-18469400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:18468600-18469400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr10:18468600-18469400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:18468600-18469400	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr10:18468600-18469400	Enhancers	NHDF-Ad	bronchial
23	chr10:18468800-18469400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:18468800-18469400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:18468800-18469400	Enhancers	Brain Angular Gyrus	brain
26	chr10:18468800-18469400	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:18468800-18469400	Flanking Active TSS	Fetal Lung	lung
28	chr10:18468800-18469400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr10:18468800-18469400	Flanking Active TSS	Osteobl	bone
30	chr10:18468800-18469600	Enhancers	Psoas Muscle	Psoas
31	chr10:18469000-18469400	Flanking Active TSS	Left Ventricle	heart
32	chr10:18469000-18469400	Active TSS	Right Ventricle	heart
33	chr10:18469000-18469600	Enhancers	Brain Substantia Nigra	brain
34	chr10:18469000-18469600	Enhancers	Pancreas	Pancrea
35	chr10:18469000-18470200	Enhancers	Right Atrium	heart
36	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
37	chr10:18469200-18469400	Active TSS	Brain Anterior Caudate	brain
38	chr10:18469200-18469400	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr10:18469200-18469400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr10:18469200-18469400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr10:18469200-18469400	Enhancers	NH-A	brain
42	chr10:18469200-18469600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:18469200-18469600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr10:18469200-18469600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:18469200-18469600	Enhancers	Fetal Brain Female	brain
46	chr10:18469200-18469600	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr10:18469200-18469600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine

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