Variant report

Variant	rs12261030
Chromosome Location	chr10:18458221-18458222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11012860	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246467	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246864	0.86[AFR][1000 genomes]
rs12256445	0.83[AFR][1000 genomes]
rs12263596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392648	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9663417	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522505	chr10:18453209-18465479	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
7	chr10:18452800-18466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:18453000-18459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:18453400-18458600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:18453800-18465000	Weak transcription	Fetal Heart	heart
11	chr10:18454600-18459000	Weak transcription	Left Ventricle	heart
12	chr10:18454600-18462200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:18454600-18467000	Weak transcription	Fetal Lung	lung
14	chr10:18454600-18467200	Weak transcription	Fetal Stomach	stomach
15	chr10:18454600-18467600	Weak transcription	Aorta	Aorta
16	chr10:18454600-18469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:18454800-18460600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:18454800-18461400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:18454800-18465800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:18454800-18466800	Weak transcription	Brain Anterior Caudate	brain
21	chr10:18456800-18466800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:18457200-18458400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:18457600-18467600	Weak transcription	Ovary	ovary

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