Variant report

Variant	rs12247333
Chromosome Location	chr10:110917257-110917258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11194403	0.90[ASN][1000 genomes]
rs11194404	0.90[ASN][1000 genomes]
rs11194410	0.94[ASN][1000 genomes]
rs11194425	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12253952	0.94[ASN][1000 genomes]
rs12254267	0.90[ASN][1000 genomes]
rs12269512	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12764755	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324275	0.80[EUR][1000 genomes]
rs17125722	0.86[ASN][1000 genomes]
rs1926576	0.94[ASN][1000 genomes]
rs2147283	0.90[EUR][1000 genomes]
rs2147284	0.90[EUR][1000 genomes]
rs2147285	0.90[EUR][1000 genomes]
rs4406760	0.90[ASN][1000 genomes]
rs61883172	0.90[EUR][1000 genomes]
rs61883173	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071395	0.94[ASN][1000 genomes]
rs7076739	0.80[EUR][1000 genomes]
rs7084930	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7092187	0.90[ASN][1000 genomes]
rs7894398	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894511	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7922017	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9783275	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv895996	chr10:110739765-110991026	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2761625	chr10:110809519-110977245	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1036870	chr10:110818324-110980456	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv895998	chr10:110830862-111041310	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv895999	chr10:110833523-111041310	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3502424	chr10:110915776-110920303	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3502426	chr10:110915812-110919910	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3502425	chr10:110916212-110919810	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3316663	chr10:110916759-110919456	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3316652	chr10:110916794-110919446	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3502422	chr10:110916798-110919420	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3502423	chr10:110916808-110919444	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3502428	chr10:110916812-110919384	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3502427	chr10:110916839-110919396	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3316674	chr10:110916899-110919351	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3502429	chr10:110916899-110919351	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv14759	chr10:110916979-110919295	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110916400-110917400	Enhancers	Placenta Amnion	Placenta Amnion

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