Variant report

Variant	rs12247488
Chromosome Location	chr10:27244050-27244051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12250172	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251173	0.84[AMR][1000 genomes]
rs12262832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082691	0.84[AMR][1000 genomes]
rs7902050	0.92[AMR][1000 genomes]
rs7906570	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043456	chr10:27225904-27246821	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947785	chr10:27240343-27246633	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27241200-27257400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:27241400-27244600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:27242800-27249200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27243000-27294800	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links