Variant report

Variant	rs12247990
Chromosome Location	chr10:18376651-18376652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11012618	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12256910	0.81[ASN][1000 genomes]
rs6482171	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18374400-18377200	Enhancers	Fetal Lung	lung
2	chr10:18374600-18377400	Enhancers	Fetal Stomach	stomach
3	chr10:18375000-18377400	Enhancers	Colon Smooth Muscle	Colon
4	chr10:18375800-18377000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:18376000-18376800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:18376200-18376800	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:18376200-18377200	Enhancers	Brain Hippocampus Middle	brain
8	chr10:18376400-18376800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:18376400-18376800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:18376400-18377000	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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