The 2.0 version of rSNPBase

Variant report

Variant rs12247999
Chromosome Location chr10:89830746-89830747
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89819800-89832800 Enhancers Primary B cells from peripheral blood blood
2 chr10:89820800-89832400 Enhancers Primary monocytes fromperipheralblood blood
3 chr10:89821600-89830800 Enhancers Fetal Thymus thymus
4 chr10:89823000-89835600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr10:89825200-89830800 Weak transcription Lung lung
6 chr10:89825200-89831600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr10:89825200-89835000 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr10:89825800-89830800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr10:89826400-89839200 Weak transcription Fetal Lung lung
10 chr10:89826600-89831600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr10:89826600-89835800 Weak transcription Psoas Muscle Psoas
12 chr10:89827200-89831400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr10:89827200-89831600 Weak transcription Fetal Muscle Leg muscle
14 chr10:89827600-89831400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr10:89828000-89830800 Weak transcription Primary hematopoietic stem cells blood
16 chr10:89828200-89831600 Weak transcription Primary T cells fromperipheralblood blood
17 chr10:89828200-89831600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr10:89828200-89839400 Weak transcription Left Ventricle heart
19 chr10:89828400-89830800 Enhancers Primary neutrophils fromperipheralblood blood
20 chr10:89828400-89831400 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr10:89828400-89832000 Weak transcription Thymus Thymus
22 chr10:89829400-89831600 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr10:89829400-89832200 Enhancers NHDF-Ad bronchial
24 chr10:89829600-89831600 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr10:89829600-89831600 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr10:89829600-89831800 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr10:89829600-89835600 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr10:89829800-89831200 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr10:89830000-89830800 Flanking Active TSS GM12878-XiMat blood
30 chr10:89830000-89831000 Enhancers HepG2 liver
31 chr10:89830000-89832200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr10:89830200-89830800 Enhancers Sigmoid Colon Sigmoid Colon
33 chr10:89830200-89831800 Weak transcription Spleen Spleen
34 chr10:89830200-89832000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr10:89830400-89831000 Enhancers Liver Liver
36 chr10:89830400-89831400 Weak transcription Primary T cells from cord blood blood
37 chr10:89830400-89831400 Weak transcription Dnd41 blood
38 chr10:89830400-89832400 Enhancers Primary B cells from cord blood blood
39 chr10:89830400-89835600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr10:89830400-89835800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr10:89830400-89838600 Weak transcription NHLF lung
42 chr10:89830600-89830800 Enhancers Duodenum Mucosa Duodenum
43 chr10:89830600-89831000 Enhancers Adipose Nuclei Adipose
44 chr10:89830600-89831200 Enhancers Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015