Variant report

Variant	nsv1042027
Chromosome Location	chr10:89822721-89851993
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89620528..89622165-chr10:89831727..89833918,2	MCF-7	breast:
2	chr10:89851904..89854023-chr10:89865175..89867253,2	MCF-7	breast:
3	chr10:89812551..89815010-chr10:89824717..89826401,2	MCF-7	breast:
4	chr10:89621388..89621896-chr10:89851162..89851914,2	MCF-7	breast:
5	chr10:89829976..89832941-chr19:14529125..14530950,2	MCF-7	breast:
6	chr10:89800523..89803853-chr10:89848283..89850995,3	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNLS-1	chr10:89839141-89840364	XLOC_008895
2	lnc-RNLS-1	chr10:89832454-89832948	XLOC_008895

No data

Variant related genes	Relation type
ENSG00000123136	chromatin interactions

Extended variants
information (count: 1059 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:1059 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1855970	chr10:89822721-89822722	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs554441886	chr10:89822774-89822775	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs572675963	chr10:89822943-89822944	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs72816158	chr10:89823006-89823007	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs77332710	chr10:89823026-89823027	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs531619475	chr10:89823031-89823032	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs543466776	chr10:89823057-89823058	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs565050939	chr10:89823076-89823077	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs7090361	chr10:89823093-89823094	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs547322449	chr10:89823106-89823107	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs188273791	chr10:89823146-89823147	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs945559	chr10:89823147-89823148	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs372795665	chr10:89823191-89823192	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs112510847	chr10:89823264-89823265	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs558847127	chr10:89823267-89823268	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs569622430	chr10:89823280-89823281	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs372044545	chr10:89823312-89823313	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs537053310	chr10:89823341-89823342	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs368646991	chr10:89823358-89823359	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs569416590	chr10:89823361-89823362	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs193172102	chr10:89823378-89823379	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs139394768	chr10:89823389-89823390	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs149634331	chr10:89823405-89823406	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs78475206	chr10:89823413-89823414	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs144413035	chr10:89823415-89823416	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs542926485	chr10:89823420-89823421	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs554848170	chr10:89823465-89823466	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs74737084	chr10:89823474-89823475	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs543454599	chr10:89823514-89823515	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs148770313	chr10:89823545-89823546	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs4934377	chr10:89823570-89823571	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs554895676	chr10:89823643-89823644	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs559248800	chr10:89823662-89823663	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs529901698	chr10:89823683-89823684	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs544202479	chr10:89823701-89823702	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs11302502	chr10:89823768-89823769	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs144829627	chr10:89823802-89823803	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs372103417	chr10:89823820-89823821	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs375881077	chr10:89823823-89823824	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs184578986	chr10:89823824-89823825	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs530515606	chr10:89823844-89823845	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs552227931	chr10:89823897-89823898	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs575028001	chr10:89823929-89823930	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs540592886	chr10:89824016-89824017	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs188551250	chr10:89824033-89824034	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs191257984	chr10:89824089-89824090	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs61854366	chr10:89824121-89824122	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs61854367	chr10:89824151-89824152	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs545305395	chr10:89824152-89824153	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs565069711	chr10:89824157-89824158	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Lung adenocarcinoma	17982442	CNVD

Chromatin state (count:660 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89819400-89830400	Enhancers	Primary T cells from cord blood	blood
2	chr10:89819800-89823200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:89819800-89826400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:89819800-89828200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr10:89819800-89832800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:89820000-89822800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:89820000-89826200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:89820000-89826400	Enhancers	Primary B cells from cord blood	blood
9	chr10:89820800-89823000	Weak transcription	Esophagus	oesophagus
10	chr10:89820800-89824600	Weak transcription	Spleen	Spleen
11	chr10:89820800-89829400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:89820800-89832400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:89821000-89823800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:89821000-89823800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:89821400-89823800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:89821400-89828400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:89821600-89823200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:89821600-89823200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:89821600-89823200	Enhancers	Right Atrium	heart
20	chr10:89821600-89823600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr10:89821600-89823600	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:89821600-89824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:89821600-89825400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:89821600-89826400	Enhancers	Adipose Nuclei	Adipose
25	chr10:89821600-89826400	Enhancers	Fetal Lung	lung
26	chr10:89821600-89828000	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:89821600-89830800	Enhancers	Fetal Thymus	thymus
28	chr10:89822000-89823000	Flanking Active TSS	GM12878-XiMat	blood
29	chr10:89822000-89823200	Enhancers	Psoas Muscle	Psoas
30	chr10:89822000-89823200	Enhancers	Right Ventricle	heart
31	chr10:89822000-89823400	Enhancers	Left Ventricle	heart
32	chr10:89822000-89823400	Enhancers	NH-A	brain
33	chr10:89822000-89823600	Enhancers	Placenta	Placenta
34	chr10:89822000-89825400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:89822000-89825600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:89822000-89826000	Enhancers	Liver	Liver
37	chr10:89822000-89828200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr10:89822000-89828400	Enhancers	Thymus	Thymus
39	chr10:89822000-89829600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr10:89822200-89822800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:89822200-89823000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:89822200-89823000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:89822200-89823000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:89822200-89823200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:89822200-89823200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr10:89822200-89823200	Enhancers	Gastric	stomach
47	chr10:89822200-89823200	Enhancers	Lung	lung
48	chr10:89822200-89823200	Enhancers	Ovary	ovary
49	chr10:89822200-89823200	Enhancers	Pancreas	Pancrea
50	chr10:89822200-89823200	Enhancers	A549	lung

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