Variant report

Variant	rs61854367
Chromosome Location	chr10:89824151-89824152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17108235	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108242	0.88[ASN][1000 genomes]
rs17108289	0.85[ASN][1000 genomes]
rs1889918	0.87[EUR][1000 genomes]
rs41432945	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174856	0.81[ASN][1000 genomes]
rs61854363	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854364	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854370	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854371	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854375	0.81[ASN][1000 genomes]
rs61854436	0.81[ASN][1000 genomes]
rs7089812	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1042027	chr10:89822721-89851993	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89819400-89830400	Enhancers	Primary T cells from cord blood	blood
2	chr10:89819800-89826400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr10:89819800-89828200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:89819800-89832800	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:89820000-89826200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:89820000-89826400	Enhancers	Primary B cells from cord blood	blood
7	chr10:89820800-89824600	Weak transcription	Spleen	Spleen
8	chr10:89820800-89829400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:89820800-89832400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:89821400-89828400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:89821600-89824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:89821600-89825400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:89821600-89826400	Enhancers	Adipose Nuclei	Adipose
14	chr10:89821600-89826400	Enhancers	Fetal Lung	lung
15	chr10:89821600-89828000	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:89821600-89830800	Enhancers	Fetal Thymus	thymus
17	chr10:89822000-89825400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:89822000-89825600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:89822000-89826000	Enhancers	Liver	Liver
20	chr10:89822000-89828200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr10:89822000-89828400	Enhancers	Thymus	Thymus
22	chr10:89822000-89829600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr10:89822200-89825000	Enhancers	NHLF	lung
24	chr10:89822200-89825400	Enhancers	Fetal Stomach	stomach
25	chr10:89822200-89826000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:89822200-89827000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:89822200-89829600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:89822400-89824600	Enhancers	Brain Hippocampus Middle	brain
29	chr10:89822400-89825400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:89822400-89825400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:89822400-89825600	Enhancers	NHDF-Ad	bronchial
32	chr10:89822400-89826200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr10:89822400-89826400	Enhancers	Fetal Intestine Small	intestine
34	chr10:89822600-89825200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:89822600-89825200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:89822800-89825000	Enhancers	Aorta	Aorta
37	chr10:89822800-89826000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:89822800-89826600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:89823000-89824200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:89823000-89825400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:89823000-89835600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:89823200-89824400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:89823200-89824400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:89823200-89824400	Weak transcription	Lung	lung
45	chr10:89823200-89824400	Weak transcription	Psoas Muscle	Psoas
46	chr10:89823200-89824600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:89823200-89824600	Weak transcription	Gastric	stomach
48	chr10:89823200-89824600	Weak transcription	Right Atrium	heart
49	chr10:89823200-89824800	Weak transcription	Pancreas	Pancrea
50	chr10:89823200-89824800	Weak transcription	Right Ventricle	heart

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