Variant report

Variant	rs56174856
Chromosome Location	chr10:89838597-89838598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17108235	0.81[ASN][1000 genomes]
rs17108242	0.87[ASN][1000 genomes]
rs17108289	0.90[ASN][1000 genomes]
rs41432945	0.81[ASN][1000 genomes]
rs61854363	0.81[ASN][1000 genomes]
rs61854364	0.81[ASN][1000 genomes]
rs61854366	0.81[ASN][1000 genomes]
rs61854367	0.81[ASN][1000 genomes]
rs61854370	0.81[ASN][1000 genomes]
rs61854371	0.81[ASN][1000 genomes]
rs61854375	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854436	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1042027	chr10:89822721-89851993	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89826400-89839200	Weak transcription	Fetal Lung	lung
2	chr10:89828200-89839400	Weak transcription	Left Ventricle	heart
3	chr10:89830400-89838600	Weak transcription	NHLF	lung
4	chr10:89831000-89839000	Weak transcription	Lung	lung
5	chr10:89832200-89849600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:89832400-89842600	Weak transcription	Dnd41	blood
7	chr10:89836200-89839200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:89836200-89839600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:89836200-89839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:89836200-89839800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89836400-89838600	Weak transcription	Gastric	stomach
12	chr10:89836400-89838600	Weak transcription	Pancreas	Pancrea
13	chr10:89836400-89839200	Weak transcription	Liver	Liver
14	chr10:89836400-89839600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:89836400-89839600	Weak transcription	Osteobl	bone
16	chr10:89836400-89839800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:89836400-89839800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:89836400-89841200	Weak transcription	Psoas Muscle	Psoas
19	chr10:89836600-89840000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:89836600-89840800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:89836600-89852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:89837600-89839800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:89837600-89840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:89838200-89838600	Weak transcription	GM12878-XiMat	blood
25	chr10:89838400-89840000	Enhancers	Pancreatic Islets	Pancreatic Islet

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