The 2.0 version of rSNPBase

Variant report

Variant rs61854436
Chromosome Location chr10:89840228-89840229
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89832200-89849600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr10:89832400-89842600 Weak transcription Dnd41 blood
3 chr10:89836400-89841200 Weak transcription Psoas Muscle Psoas
4 chr10:89836600-89840800 Weak transcription Primary neutrophils fromperipheralblood blood
5 chr10:89836600-89852400 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr10:89838600-89840600 Enhancers NHLF lung
7 chr10:89839000-89841200 Enhancers HepG2 liver
8 chr10:89839200-89840600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
9 chr10:89839200-89840600 Enhancers Colon Smooth Muscle Colon
10 chr10:89839200-89840600 Enhancers Fetal Lung lung
11 chr10:89839200-89840600 Enhancers Stomach Mucosa stomach
12 chr10:89839200-89840800 Enhancers Rectal Smooth Muscle rectum
13 chr10:89839200-89841000 Enhancers Fetal Kidney kidney
14 chr10:89839200-89841200 Enhancers Fetal Intestine Large intestine
15 chr10:89839200-89842600 Enhancers Fetal Intestine Small intestine
16 chr10:89839200-89844400 Enhancers Liver Liver
17 chr10:89839400-89840400 Enhancers Aorta Aorta
18 chr10:89839400-89840600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
19 chr10:89839400-89840800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr10:89839400-89855000 Weak transcription Lung lung
21 chr10:89839600-89840600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr10:89839600-89840600 Enhancers Stomach Smooth Muscle stomach
23 chr10:89839600-89840600 Enhancers Osteobl bone
24 chr10:89839600-89840800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr10:89839600-89841200 Weak transcription Pancreas Pancrea
26 chr10:89839600-89842200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr10:89839600-89843200 Flanking Active TSS GM12878-XiMat blood
28 chr10:89839600-89844200 Enhancers Primary B cells from peripheral blood blood
29 chr10:89839600-89851600 Weak transcription Gastric stomach
30 chr10:89839800-89840400 Enhancers Muscle Satellite Cultured Cells --
31 chr10:89839800-89840400 Flanking Active TSS A549 lung
32 chr10:89839800-89840400 Enhancers HSMMtube muscle
33 chr10:89839800-89840600 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr10:89839800-89840600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
35 chr10:89839800-89840600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr10:89839800-89840600 Enhancers Skeletal Muscle Male skeletal muscle
37 chr10:89839800-89840600 Enhancers Small Intestine intestine
38 chr10:89839800-89840600 Enhancers NH-A brain
39 chr10:89839800-89840600 Enhancers NHDF-Ad bronchial
40 chr10:89839800-89840800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr10:89839800-89843800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr10:89839800-89844200 Enhancers Primary monocytes fromperipheralblood blood
43 chr10:89840000-89840400 Enhancers Primary hematopoietic stem cells blood
44 chr10:89840000-89840400 Flanking Active TSS Pancreatic Islets Pancreatic Islet
45 chr10:89840000-89840400 Enhancers Fetal Stomach stomach
46 chr10:89840000-89840400 Enhancers Rectal Mucosa Donor 29 rectum
47 chr10:89840000-89840600 Enhancers Duodenum Smooth Muscle Duodenum
48 chr10:89840000-89840600 Enhancers Rectal Mucosa Donor 31 rectum
49 chr10:89840000-89840600 Enhancers Sigmoid Colon Sigmoid Colon
50 chr10:89840000-89840800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015