Variant report

Variant	rs61854364
Chromosome Location	chr10:89821216-89821217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17108235	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108242	0.88[ASN][1000 genomes]
rs17108289	0.85[ASN][1000 genomes]
rs1889918	0.90[EUR][1000 genomes]
rs41432945	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174856	0.81[ASN][1000 genomes]
rs61854363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854366	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854367	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854370	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854371	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854375	0.81[ASN][1000 genomes]
rs61854436	0.81[ASN][1000 genomes]
rs7089812	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
2	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
3	chr10:89818200-89822200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:89818600-89822200	Weak transcription	Pancreas	Pancrea
5	chr10:89819000-89822200	Enhancers	Dnd41	blood
6	chr10:89819400-89830400	Enhancers	Primary T cells from cord blood	blood
7	chr10:89819800-89823200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:89819800-89826400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr10:89819800-89828200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:89819800-89832800	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:89820000-89822000	Enhancers	GM12878-XiMat	blood
12	chr10:89820000-89822200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:89820000-89822800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:89820000-89826200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:89820000-89826400	Enhancers	Primary B cells from cord blood	blood
16	chr10:89820200-89821600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:89820400-89821600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:89820600-89821600	Weak transcription	Fetal Thymus	thymus
19	chr10:89820800-89821600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:89820800-89822000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:89820800-89822000	Weak transcription	Left Ventricle	heart
22	chr10:89820800-89822000	Weak transcription	HepG2	liver
23	chr10:89820800-89822200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:89820800-89822200	Weak transcription	Gastric	stomach
25	chr10:89820800-89822200	Weak transcription	Lung	lung
26	chr10:89820800-89823000	Weak transcription	Esophagus	oesophagus
27	chr10:89820800-89824600	Weak transcription	Spleen	Spleen
28	chr10:89820800-89829400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr10:89820800-89832400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:89821000-89821400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:89821000-89822000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:89821000-89823800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:89821000-89823800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:89821200-89822000	Enhancers	Monocytes-CD14+_RO01746	blood

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