The 2.0 version of rSNPBase

Variant report

Variant rs554441886
Chromosome Location chr10:89822774-89822775
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89819400-89830400 Enhancers Primary T cells from cord blood blood
2 chr10:89819800-89823200 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr10:89819800-89826400 Enhancers Primary T helper naive cells fromperipheralblood blood
4 chr10:89819800-89828200 Enhancers Primary T cells fromperipheralblood blood
5 chr10:89819800-89832800 Enhancers Primary B cells from peripheral blood blood
6 chr10:89820000-89822800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr10:89820000-89826200 Enhancers Primary T helper cells PMA-I stimulated --
8 chr10:89820000-89826400 Enhancers Primary B cells from cord blood blood
9 chr10:89820800-89823000 Weak transcription Esophagus oesophagus
10 chr10:89820800-89824600 Weak transcription Spleen Spleen
11 chr10:89820800-89829400 Enhancers Primary T helper cells fromperipheralblood blood
12 chr10:89820800-89832400 Enhancers Primary monocytes fromperipheralblood blood
13 chr10:89821000-89823800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr10:89821000-89823800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr10:89821400-89823800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr10:89821400-89828400 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr10:89821600-89823200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr10:89821600-89823200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr10:89821600-89823200 Enhancers Right Atrium heart
20 chr10:89821600-89823600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
21 chr10:89821600-89823600 Enhancers Duodenum Mucosa Duodenum
22 chr10:89821600-89824400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr10:89821600-89825400 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr10:89821600-89826400 Enhancers Adipose Nuclei Adipose
25 chr10:89821600-89826400 Enhancers Fetal Lung lung
26 chr10:89821600-89828000 Enhancers Primary hematopoietic stem cells blood
27 chr10:89821600-89830800 Enhancers Fetal Thymus thymus
28 chr10:89822000-89823000 Flanking Active TSS GM12878-XiMat blood
29 chr10:89822000-89823200 Enhancers Psoas Muscle Psoas
30 chr10:89822000-89823200 Enhancers Right Ventricle heart
31 chr10:89822000-89823400 Enhancers Left Ventricle heart
32 chr10:89822000-89823400 Enhancers NH-A brain
33 chr10:89822000-89823600 Enhancers Placenta Placenta
34 chr10:89822000-89825400 Enhancers Skeletal Muscle Female skeletal muscle
35 chr10:89822000-89825600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr10:89822000-89826000 Enhancers Liver Liver
37 chr10:89822000-89828200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
38 chr10:89822000-89828400 Enhancers Thymus Thymus
39 chr10:89822000-89829600 Enhancers Primary T killer naive cells fromperipheralblood blood
40 chr10:89822200-89822800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr10:89822200-89823000 Enhancers ES-I3 Cell Line embryonic stem cell
42 chr10:89822200-89823000 Enhancers HUES6 Cell Line embryonic stem cell
43 chr10:89822200-89823000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr10:89822200-89823200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr10:89822200-89823200 Enhancers Muscle Satellite Cultured Cells --
46 chr10:89822200-89823200 Enhancers Gastric stomach
47 chr10:89822200-89823200 Enhancers Lung lung
48 chr10:89822200-89823200 Enhancers Ovary ovary
49 chr10:89822200-89823200 Enhancers Pancreas Pancrea
50 chr10:89822200-89823200 Enhancers A549 lung

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Last update: Aug 31, 2015