Variant report

Variant	rs12248189
Chromosome Location	chr10:23747998-23747999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23729334..23732028-chr10:23747440..23749180,2	MCF-7	breast:
2	chr10:23726406..23728774-chr10:23747265..23750209,2	MCF-7	breast:
3	chr10:23747675..23750331-chr10:23769327..23772005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11013471	1.00[AFR][1000 genomes]
rs11013504	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
5	chr10:23741400-23748800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
7	chr10:23742400-23750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:23745200-23748000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:23746000-23748600	Enhancers	Primary B cells from cord blood	blood
10	chr10:23746200-23749200	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:23746600-23748600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:23746600-23751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:23747000-23748000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:23747600-23749400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:23747600-23750400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:23747600-23750400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:23747600-23750600	Weak transcription	Psoas Muscle	Psoas
18	chr10:23747800-23748600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:23747800-23748600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:23747800-23748600	Enhancers	NHEK	skin
21	chr10:23747800-23749800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:23747800-23750400	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links