Variant report

Variant	rs12248677
Chromosome Location	chr10:56331403-56331404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10763118	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs12570889	0.83[ASN][1000 genomes]
rs12763336	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12769874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17737445	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17737479	0.91[EUR][1000 genomes]
rs1892344	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2026410	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2026412	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7072003	1.00[CEU][hapmap]
rs7092655	0.83[EUR][1000 genomes]
rs951435	0.91[CEU][hapmap]
rs984915	0.91[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895444	chr10:56254206-56354118	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6709	chr10:56303925-56348716	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv550968	chr10:56319852-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases
7	nsv467228	chr10:56322477-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases
8	nsv550969	chr10:56322477-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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