Variant report

Variant	rs2026410
Chromosome Location	chr10:56345511-56345512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10763118	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10763119	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10763120	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs12248677	0.91[CEU][hapmap]
rs12763336	0.92[CEU][hapmap]
rs12769874	0.92[CEU][hapmap]
rs17737445	0.92[CEU][hapmap]
rs1892344	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1930158	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap]
rs1937410	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1937413	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1937415	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1937417	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2026409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2026411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2026412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2154267	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2384473	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4007216	1.00[ASN][1000 genomes]
rs4503435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6481106	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6481107	0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7072003	0.91[CEU][hapmap]
rs7089865	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7092655	1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095317	0.87[CHB][hapmap]
rs7901268	0.83[CHB][hapmap]
rs951435	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs984915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895444	chr10:56254206-56354118	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6709	chr10:56303925-56348716	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2026410	MBL2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56345400-56345600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links