Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10740585	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10763118	0.99[ASN][1000 genomes]
rs1892344	0.95[ASN][1000 genomes]
rs1930155	0.85[EUR][1000 genomes]
rs1930156	0.85[EUR][1000 genomes]
rs1930157	0.85[EUR][1000 genomes]
rs1937407	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1937410	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026410	1.00[ASN][1000 genomes]
rs2026411	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026412	1.00[ASN][1000 genomes]
rs2154267	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4381287	0.85[EUR][1000 genomes]
rs4520501	0.85[EUR][1000 genomes]
rs7076026	0.85[EUR][1000 genomes]
rs7089865	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092655	0.97[ASN][1000 genomes]
rs949689	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs949690	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs984915	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895444	chr10:56254206-56354118	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6709	chr10:56303925-56348716	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56345800-56346800	Weak transcription	HUVEC	blood vessel

Quick Search: