Variant report

Variant	rs1937415
Chromosome Location	chr10:56361007-56361008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10740585	0.81[EUR][1000 genomes]
rs10763118	0.93[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10763119	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs10763120	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs1892344	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs1930155	0.81[EUR][1000 genomes]
rs1930156	0.81[EUR][1000 genomes]
rs1930157	0.81[EUR][1000 genomes]
rs1930158	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1937407	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1937410	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1937413	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1937417	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2026409	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2026410	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2026411	0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2026412	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2026413	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2154267	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2384473	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs4007216	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4381287	0.81[EUR][1000 genomes]
rs4503435	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4520501	0.81[EUR][1000 genomes]
rs4935525	0.87[CHB][hapmap]
rs6481106	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs6481107	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs7076026	0.81[EUR][1000 genomes]
rs7089865	0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7092655	0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7096402	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7901268	0.84[CHB][hapmap]
rs949689	0.81[EUR][1000 genomes]
rs949690	0.81[EUR][1000 genomes]
rs951435	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs984915	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	esv3419208	chr10:56351995-56372121	Enhancers Weak transcription	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045621	chr10:56353504-56468425	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv947622	chr10:56360404-56368476	Enhancers Weak transcription	TF binding region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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