Variant report

Variant	rs12249960
Chromosome Location	chr10:23013601-23013602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1171491	0.85[AMR][1000 genomes]
rs1171495	0.85[AMR][1000 genomes]
rs1171498	0.85[AMR][1000 genomes]
rs1171508	1.00[AMR][1000 genomes]
rs16922592	0.86[AMR][1000 genomes]
rs1778305	0.86[AMR][1000 genomes]
rs1778306	0.86[AMR][1000 genomes]
rs1778341	0.85[AMR][1000 genomes]
rs2559519	0.81[AMR][1000 genomes]
rs2798980	0.85[AMR][1000 genomes]
rs943191	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
3	chr10:23009800-23016600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23010600-23014000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:23011400-23014000	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:23012600-23014800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:23012600-23015800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:23013000-23014000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:23013200-23014000	Enhancers	Primary B cells from cord blood	blood
10	chr10:23013600-23014000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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