Variant report

Variant	rs16922592
Chromosome Location	chr10:22967198-22967199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22959644..22961517-chr10:22966736..22968409,2	K562	blood:
2	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
3	chr10:22966497..22969699-chr10:23002179..23004724,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1171491	0.80[EUR][1000 genomes]
rs1171495	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1171498	0.80[EUR][1000 genomes]
rs1171504	0.88[YRI][hapmap]
rs1171508	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1171509	0.93[YRI][hapmap]
rs12241403	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs12249960	0.86[AMR][1000 genomes]
rs12357289	1.00[YRI][hapmap]
rs1326339	1.00[CEU][hapmap]
rs1326342	1.00[CEU][hapmap]
rs1359641	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap]
rs1359643	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs1409393	0.88[YRI][hapmap]
rs1409395	0.93[YRI][hapmap]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1627549	0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs1628535	0.84[EUR][1000 genomes]
rs1750743	0.82[EUR][1000 genomes]
rs1750764	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs1750765	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1750768	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs1750769	0.80[EUR][1000 genomes]
rs1750771	0.84[EUR][1000 genomes]
rs1750772	0.84[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1750777	0.93[YRI][hapmap]
rs1778305	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778306	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1778309	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.87[YRI][hapmap]
rs1778313	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs1778319	0.81[EUR][1000 genomes]
rs1778320	0.80[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs1778322	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1778328	0.84[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778339	0.88[YRI][hapmap]
rs1778340	0.88[YRI][hapmap]
rs1778341	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1778344	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778346	0.86[YRI][hapmap]
rs1778347	0.93[YRI][hapmap]
rs2559519	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.84[EUR][1000 genomes]
rs2798980	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2798981	0.93[YRI][hapmap]
rs7078635	1.00[CHD][hapmap]
rs7082472	1.00[CEU][hapmap]
rs943191	0.80[EUR][1000 genomes]
rs943192	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22949200-22969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:22952000-22970200	Weak transcription	Esophagus	oesophagus
3	chr10:22952400-22970000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:22955800-22970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:22956000-22970400	Weak transcription	NHLF	lung
6	chr10:22956200-22968200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:22956200-22970200	Weak transcription	Liver	Liver
8	chr10:22956800-22971600	Weak transcription	Primary B cells from cord blood	blood
9	chr10:22958200-22967200	Enhancers	Brain Anterior Caudate	brain
10	chr10:22958400-22972200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:22958600-22971000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:22958800-22968400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:22958800-22969800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:22958800-22969800	Weak transcription	Left Ventricle	heart
16	chr10:22959000-22968200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:22959200-22971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:22959200-22971600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:22960000-22967600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:22960000-22967600	Enhancers	Brain Substantia Nigra	brain
22	chr10:22960200-22967400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:22960600-22969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:22960600-22971400	Weak transcription	Right Ventricle	heart
25	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:22962000-22969400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:22962000-22969600	Weak transcription	Aorta	Aorta
28	chr10:22962200-22968400	Weak transcription	HepG2	liver
29	chr10:22962200-22969400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:22962200-22969600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:22962200-22969600	Weak transcription	HMEC	breast
32	chr10:22962200-22971400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:22962200-22971600	Weak transcription	Spleen	Spleen
34	chr10:22962400-22968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:22962600-22974600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:22963200-22968200	Weak transcription	GM12878-XiMat	blood
37	chr10:22963200-22969400	Weak transcription	A549	lung
38	chr10:22963200-22969600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr10:22963200-22970200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:22963200-22970800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:22963200-22971000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:22963200-22971400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:22963200-22972600	Weak transcription	Adipose Nuclei	Adipose
44	chr10:22963400-22969400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:22963400-22970200	Weak transcription	NHDF-Ad	bronchial
46	chr10:22963600-22968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:22963600-22969200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:22963600-22969400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:22964000-22971600	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:22964000-22973600	Weak transcription	Psoas Muscle	Psoas

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