Variant report

Variant	rs1778344
Chromosome Location	chr10:22937286-22937287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22935997..22937858-chr10:22985488..22987779,2	K562	blood:
2	chr10:22935992..22938184-chr10:22964745..22966524,2	MCF-7	breast:
3	chr10:22936873..22940866-chr10:22947347..22949426,3	K562	blood:
4	chr10:22936873..22939042-chr10:22947347..22949237,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1171491	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1171495	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1171498	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1171508	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12241403	1.00[CEU][hapmap]
rs1326339	1.00[CEU][hapmap]
rs1326342	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1359641	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1359643	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1536333	1.00[CEU][hapmap]
rs1620658	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1627549	1.00[EUR][1000 genomes]
rs1628535	1.00[EUR][1000 genomes]
rs16922592	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1750743	0.82[EUR][1000 genomes]
rs1750764	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1750765	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1750766	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1750767	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1750768	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1750769	0.96[EUR][1000 genomes]
rs1750771	1.00[EUR][1000 genomes]
rs1750772	1.00[EUR][1000 genomes]
rs1750773	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1750774	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778302	0.92[YRI][hapmap]
rs1778305	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1778306	0.82[EUR][1000 genomes]
rs1778309	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778312	0.88[EUR][1000 genomes]
rs1778313	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1778319	0.96[EUR][1000 genomes]
rs1778320	0.96[EUR][1000 genomes]
rs1778321	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778322	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778324	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778325	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778326	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1778328	1.00[EUR][1000 genomes]
rs1778329	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1778330	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1778332	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1778341	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1778352	0.91[YRI][hapmap]
rs2559519	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2559525	0.88[EUR][1000 genomes]
rs2559529	0.92[YRI][hapmap]
rs2798980	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7082472	1.00[CEU][hapmap]
rs7900517	0.92[YRI][hapmap]
rs943191	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22921000-22940400	Weak transcription	Ovary	ovary
3	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
6	chr10:22929200-22938600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:22929800-22939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:22930400-22938600	Enhancers	Brain Hippocampus Middle	brain
10	chr10:22931200-22938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:22931200-22938400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
13	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus
14	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:22933400-22937400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:22933600-22938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
18	chr10:22934800-22937800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:22934800-22939400	Enhancers	Dnd41	blood
20	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:22935000-22938200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:22935000-22938600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:22935000-22939000	Enhancers	Thymus	Thymus
24	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
25	chr10:22935200-22938400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:22935200-22938600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:22935200-22938600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:22935200-22938800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:22935200-22939200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
31	chr10:22935400-22937400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:22935400-22937800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:22935400-22938000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr10:22935400-22938800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:22935600-22937400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:22935600-22937400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:22935600-22937800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr10:22935600-22938000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:22935600-22938000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:22935600-22938800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr10:22935600-22939000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:22935800-22937600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr10:22935800-22938200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:22936000-22938000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr10:22936000-22938200	Enhancers	Adipose Nuclei	Adipose
46	chr10:22936000-22938400	Enhancers	Fetal Kidney	kidney
47	chr10:22936200-22937600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:22936200-22937600	Enhancers	NHDF-Ad	bronchial
49	chr10:22936200-22938000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:22936200-22938000	Enhancers	Fetal Heart	heart

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