Variant report

Variant	rs2559525
Chromosome Location	chr10:22895829-22895830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22878706..22881547-chr10:22895040..22897400,2	MCF-7	breast:
2	chr10:22892740..22895922-chr10:23342638..23345686,4	K562	blood:
3	chr10:22894422..22896822-chr10:23343724..23345259,2	K562	blood:
4	chr10:22894884..22897373-chr10:22931733..22933332,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1171491	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1171495	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1171498	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1171501	1.00[AFR][1000 genomes]
rs1171508	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12260388	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1326335	1.00[AFR][1000 genomes]
rs1326337	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1326339	0.82[EUR][1000 genomes]
rs1359643	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1536333	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1536335	1.00[AFR][1000 genomes]
rs1620658	0.88[EUR][1000 genomes]
rs1627549	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1628535	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750765	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750766	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1750767	0.88[EUR][1000 genomes]
rs1750768	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750769	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1750771	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750772	0.88[EUR][1000 genomes]
rs1750773	0.88[EUR][1000 genomes]
rs1750774	0.84[EUR][1000 genomes]
rs1778319	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778320	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1778321	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778322	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1778324	0.84[EUR][1000 genomes]
rs1778325	0.84[EUR][1000 genomes]
rs1778326	0.84[EUR][1000 genomes]
rs1778328	0.88[EUR][1000 genomes]
rs1778329	0.88[EUR][1000 genomes]
rs1778330	0.88[EUR][1000 genomes]
rs1778332	0.88[EUR][1000 genomes]
rs1778341	0.91[EUR][1000 genomes]
rs1778344	0.88[EUR][1000 genomes]
rs1831001	1.00[AFR][1000 genomes]
rs1887093	1.00[AFR][1000 genomes]
rs2798980	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35386008	1.00[AFR][1000 genomes]
rs7082472	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7084761	1.00[AFR][1000 genomes]
rs7087100	1.00[AFR][1000 genomes]
rs943191	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs943193	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:22880400-22896600	Weak transcription	Liver	Liver
10	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
14	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:22889000-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
19	chr10:22889800-22896000	Weak transcription	Aorta	Aorta
20	chr10:22890800-22896200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:22891000-22896200	Weak transcription	Fetal Heart	heart
22	chr10:22891000-22896800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:22891000-22897000	Weak transcription	Fetal Intestine Small	intestine
24	chr10:22891000-22901400	Weak transcription	Gastric	stomach
25	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
26	chr10:22891200-22904800	Weak transcription	NHLF	lung
27	chr10:22891600-22897600	Weak transcription	Left Ventricle	heart
28	chr10:22892400-22896200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:22892600-22896400	Enhancers	Brain Cingulate Gyrus	brain
30	chr10:22893200-22896600	Genic enhancers	Primary T cells from cord blood	blood
31	chr10:22893200-22897000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr10:22893600-22897800	Weak transcription	Fetal Lung	lung
33	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:22893800-22896400	Enhancers	HMEC	breast
35	chr10:22894000-22896000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:22894000-22896000	Enhancers	Brain Substantia Nigra	brain
37	chr10:22894000-22896200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:22894000-22896200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:22894000-22896200	Weak transcription	Esophagus	oesophagus
40	chr10:22894000-22896200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:22894000-22896200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:22894000-22896200	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:22894000-22896400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr10:22894000-22897000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:22894000-22897000	Weak transcription	Lung	lung
46	chr10:22894000-22898800	Weak transcription	Spleen	Spleen
47	chr10:22894000-22902600	Weak transcription	Right Atrium	heart
48	chr10:22894000-22906600	Weak transcription	Ovary	ovary
49	chr10:22894200-22896200	Weak transcription	Fetal Stomach	stomach
50	chr10:22894200-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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