Variant report

Variant	rs1887093
Chromosome Location	chr10:22831530-22831531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:22831526-22831912	HepG2	liver:	n/a	n/a
2	POLR2A	chr10:22831325-22831918	GM12878	blood:	n/a	n/a
3	MXI1	chr10:22831156-22832397	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr10:22830285-22831674	GM12891	blood:	n/a	n/a
5	POLR2A	chr10:22831241-22831758	K562	blood:	n/a	n/a
6	POLR2A	chr10:22831155-22831639	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:22830019-22835143	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22826598..22829352-chr10:22831029..22834021,2	K562	blood:
2	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
3	chr10:22830647..22832751-chr10:22836166..22838265,2	K562	blood:
4	chr10:22609418..22612107-chr10:22829799..22832731,2	MCF-7	breast:

No data

Variant related genes	Relation type
PIP4K2A	TF binding region
ENSG00000168283	Chromatin interaction
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10159727	1.00[ASN][1000 genomes]
rs10508646	1.00[ASN][1000 genomes]
rs10508647	1.00[ASN][1000 genomes]
rs10734040	0.93[EUR][1000 genomes]
rs10734041	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741004	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	1.00[ASN][1000 genomes]
rs11013013	1.00[ASN][1000 genomes]
rs11013015	1.00[ASN][1000 genomes]
rs11013016	1.00[ASN][1000 genomes]
rs11013026	1.00[ASN][1000 genomes]
rs11593715	1.00[ASN][1000 genomes]
rs1171491	1.00[AFR][1000 genomes]
rs1171495	1.00[AFR][1000 genomes]
rs1171498	1.00[AFR][1000 genomes]
rs1171501	1.00[AFR][1000 genomes]
rs1171508	1.00[AFR][1000 genomes]
rs12247353	1.00[ASN][1000 genomes]
rs12258498	1.00[ASN][1000 genomes]
rs12260388	1.00[AFR][1000 genomes]
rs12264678	1.00[ASN][1000 genomes]
rs12781081	1.00[ASN][1000 genomes]
rs1326335	1.00[AFR][1000 genomes]
rs1326337	1.00[AFR][1000 genomes]
rs1536333	1.00[AFR][1000 genomes]
rs1536335	1.00[AFR][1000 genomes]
rs1610340	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922359	1.00[ASN][1000 genomes]
rs1750769	1.00[AFR][1000 genomes]
rs1778320	1.00[AFR][1000 genomes]
rs1831001	1.00[AFR][1000 genomes]
rs2559525	1.00[AFR][1000 genomes]
rs2798980	1.00[AFR][1000 genomes]
rs28820979	1.00[ASN][1000 genomes]
rs35386008	1.00[AFR][1000 genomes]
rs4748809	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55927891	1.00[ASN][1000 genomes]
rs56269206	1.00[ASN][1000 genomes]
rs56373296	1.00[ASN][1000 genomes]
rs56768929	1.00[ASN][1000 genomes]
rs57036965	1.00[ASN][1000 genomes]
rs57074189	1.00[ASN][1000 genomes]
rs57920220	1.00[ASN][1000 genomes]
rs57965592	1.00[ASN][1000 genomes]
rs58253107	1.00[ASN][1000 genomes]
rs58402183	1.00[ASN][1000 genomes]
rs58554507	1.00[ASN][1000 genomes]
rs59759821	1.00[ASN][1000 genomes]
rs60327547	1.00[ASN][1000 genomes]
rs61377954	1.00[ASN][1000 genomes]
rs6482211	1.00[ASN][1000 genomes]
rs6482218	1.00[ASN][1000 genomes]
rs7078635	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082472	1.00[AFR][1000 genomes]
rs7084761	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087100	1.00[AFR][1000 genomes]
rs72814833	1.00[ASN][1000 genomes]
rs73598529	1.00[ASN][1000 genomes]
rs73598532	1.00[ASN][1000 genomes]
rs73598533	1.00[ASN][1000 genomes]
rs74123043	1.00[ASN][1000 genomes]
rs74123046	1.00[ASN][1000 genomes]
rs74123047	1.00[ASN][1000 genomes]
rs74123049	1.00[ASN][1000 genomes]
rs74123050	1.00[ASN][1000 genomes]
rs74123051	1.00[ASN][1000 genomes]
rs7900881	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7919655	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943191	1.00[AFR][1000 genomes]
rs943192	1.00[ASN][1000 genomes]
rs943193	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787428	1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
3	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr10:22822800-22832600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:22824000-22833800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
14	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:22824200-22831600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:22824200-22832000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:22824200-22833200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:22824200-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:22824400-22836400	Weak transcription	NHEK	skin
23	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:22824600-22836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:22825000-22832400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:22825000-22832800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr10:22825000-22833200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:22825000-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
34	chr10:22825200-22831800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:22825200-22832000	Strong transcription	Adipose Nuclei	Adipose
36	chr10:22825200-22832800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr10:22825200-22833000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr10:22825200-22833200	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:22825200-22833600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:22825200-22833600	Strong transcription	Thymus	Thymus
41	chr10:22825200-22835400	Strong transcription	Dnd41	blood
42	chr10:22825200-22840000	Strong transcription	Fetal Stomach	stomach
43	chr10:22825400-22831800	Strong transcription	Spleen	Spleen
44	chr10:22825400-22832000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr10:22825400-22836800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:22825400-22838000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:22825400-22838000	Strong transcription	Fetal Intestine Small	intestine
48	chr10:22825600-22831800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:22825600-22833000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:22825600-22843800	Weak transcription	Stomach Mucosa	stomach

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