Variant report

Variant	rs57036965
Chromosome Location	chr10:22761620-22761621
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22760035..22762735-chr10:22766285..22768720,2	K562	blood:
2	chr10:22753187..22756766-chr10:22758211..22761760,4	K562	blood:
3	chr10:22603882..22606588-chr10:22760984..22763635,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPAG6-1	chr10:22761467-22762101	XLOC_008411

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000269897	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10159727	1.00[ASN][1000 genomes]
rs10508646	1.00[ASN][1000 genomes]
rs10508647	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734041	1.00[ASN][1000 genomes]
rs10741004	1.00[ASN][1000 genomes]
rs11013007	1.00[ASN][1000 genomes]
rs11013013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013026	1.00[ASN][1000 genomes]
rs11593715	1.00[ASN][1000 genomes]
rs12247353	1.00[ASN][1000 genomes]
rs12258498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264678	1.00[ASN][1000 genomes]
rs12781081	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610340	1.00[ASN][1000 genomes]
rs16922359	1.00[ASN][1000 genomes]
rs16922373	0.95[EUR][1000 genomes]
rs17415557	1.00[ASN][1000 genomes]
rs1887093	1.00[ASN][1000 genomes]
rs28820979	1.00[ASN][1000 genomes]
rs4748809	1.00[ASN][1000 genomes]
rs55927891	1.00[ASN][1000 genomes]
rs56269206	1.00[ASN][1000 genomes]
rs56373296	1.00[ASN][1000 genomes]
rs56768929	1.00[ASN][1000 genomes]
rs57074189	1.00[ASN][1000 genomes]
rs57920220	1.00[ASN][1000 genomes]
rs57965592	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58253107	1.00[ASN][1000 genomes]
rs58402183	1.00[ASN][1000 genomes]
rs58554507	1.00[ASN][1000 genomes]
rs59759821	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60327547	1.00[ASN][1000 genomes]
rs61377954	1.00[ASN][1000 genomes]
rs6482211	1.00[ASN][1000 genomes]
rs6482218	1.00[ASN][1000 genomes]
rs7078635	1.00[ASN][1000 genomes]
rs7084761	1.00[ASN][1000 genomes]
rs72814829	1.00[ASN][1000 genomes]
rs72814833	1.00[ASN][1000 genomes]
rs73598529	1.00[ASN][1000 genomes]
rs73598532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123043	1.00[ASN][1000 genomes]
rs74123046	1.00[ASN][1000 genomes]
rs74123047	1.00[ASN][1000 genomes]
rs74123049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919655	1.00[ASN][1000 genomes]
rs943192	1.00[ASN][1000 genomes]
rs943193	1.00[ASN][1000 genomes]
rs9787428	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22755800-22764600	Weak transcription	Pancreas	Pancrea
2	chr10:22756600-22764600	Weak transcription	Gastric	stomach

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