Variant report
| Variant | rs72814829 |
|---|---|
| Chromosome Location | chr10:22566657-22566658 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10508646 | 1.00[ASN][1000 genomes] |
| rs10508647 | 1.00[ASN][1000 genomes] |
| rs11013007 | 1.00[ASN][1000 genomes] |
| rs11013013 | 1.00[ASN][1000 genomes] |
| rs11013015 | 1.00[ASN][1000 genomes] |
| rs11013016 | 1.00[ASN][1000 genomes] |
| rs11013026 | 1.00[ASN][1000 genomes] |
| rs11593715 | 1.00[ASN][1000 genomes] |
| rs12247353 | 1.00[ASN][1000 genomes] |
| rs12258498 | 1.00[ASN][1000 genomes] |
| rs12264678 | 1.00[ASN][1000 genomes] |
| rs12781081 | 1.00[ASN][1000 genomes] |
| rs16922359 | 1.00[ASN][1000 genomes] |
| rs17415557 | 1.00[ASN][1000 genomes] |
| rs28820979 | 1.00[ASN][1000 genomes] |
| rs55927891 | 1.00[ASN][1000 genomes] |
| rs56269206 | 1.00[ASN][1000 genomes] |
| rs56373296 | 1.00[ASN][1000 genomes] |
| rs56768929 | 1.00[ASN][1000 genomes] |
| rs57036965 | 1.00[ASN][1000 genomes] |
| rs57074189 | 1.00[ASN][1000 genomes] |
| rs57920220 | 1.00[ASN][1000 genomes] |
| rs57965592 | 1.00[ASN][1000 genomes] |
| rs58253107 | 1.00[ASN][1000 genomes] |
| rs58402183 | 1.00[ASN][1000 genomes] |
| rs58554507 | 1.00[ASN][1000 genomes] |
| rs59759821 | 1.00[ASN][1000 genomes] |
| rs60327547 | 1.00[ASN][1000 genomes] |
| rs61377954 | 1.00[ASN][1000 genomes] |
| rs6482211 | 1.00[ASN][1000 genomes] |
| rs6482218 | 1.00[ASN][1000 genomes] |
| rs72814833 | 1.00[ASN][1000 genomes] |
| rs73598529 | 1.00[ASN][1000 genomes] |
| rs73598532 | 1.00[ASN][1000 genomes] |
| rs73598533 | 1.00[ASN][1000 genomes] |
| rs74123043 | 1.00[ASN][1000 genomes] |
| rs74123046 | 1.00[ASN][1000 genomes] |
| rs74123047 | 1.00[ASN][1000 genomes] |
| rs74123049 | 1.00[ASN][1000 genomes] |
| rs74123050 | 1.00[ASN][1000 genomes] |
| rs74123051 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825292 | chr10:22560347-22642200 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22566600-22566800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr10:22566600-22567000 | Flanking Bivalent TSS/Enh | HepG2 | liver |
| 3 | chr10:22566600-22567600 | Active TSS | Placenta | Placenta |
| 4 | chr10:22566600-22567800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
