Variant report

Variant	rs58554507
Chromosome Location	chr10:22727118-22727119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
2	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
3	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
4	chr10:22654035..22655946-chr10:22725226..22727293,2	MCF-7	breast:
5	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
6	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
7	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
8	chr10:22720460..22723028-chr10:22724618..22727294,3	MCF-7	breast:
9	chr10:22517700..22519413-chr10:22725254..22727174,2	MCF-7	breast:
10	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
11	chr10:22604268..22606309-chr10:22726549..22728219,2	MCF-7	breast:
12	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:
13	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
14	chr10:22725325..22727863-chr10:22750975..22754414,4	MCF-7	breast:
15	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
16	chr10:22707988..22710566-chr10:22725566..22727431,2	MCF-7	breast:
17	chr10:22652382..22654198-chr10:22725095..22727355,2	MCF-7	breast:
18	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10159727	1.00[ASN][1000 genomes]
rs10508646	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508647	1.00[ASN][1000 genomes]
rs10734041	1.00[ASN][1000 genomes]
rs10741004	1.00[ASN][1000 genomes]
rs10828309	0.92[EUR][1000 genomes]
rs11012998	0.94[EUR][1000 genomes]
rs11013007	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013012	0.92[EUR][1000 genomes]
rs11013013	1.00[ASN][1000 genomes]
rs11013015	1.00[ASN][1000 genomes]
rs11013016	1.00[ASN][1000 genomes]
rs11013026	1.00[ASN][1000 genomes]
rs11593715	1.00[ASN][1000 genomes]
rs11812583	0.94[EUR][1000 genomes]
rs12243038	0.94[EUR][1000 genomes]
rs12247353	1.00[ASN][1000 genomes]
rs12248190	0.94[EUR][1000 genomes]
rs12256968	0.94[EUR][1000 genomes]
rs12258371	0.94[EUR][1000 genomes]
rs12258498	1.00[ASN][1000 genomes]
rs12262743	0.94[EUR][1000 genomes]
rs12264678	1.00[ASN][1000 genomes]
rs12265492	0.92[EUR][1000 genomes]
rs12781081	1.00[ASN][1000 genomes]
rs1610340	1.00[ASN][1000 genomes]
rs16922359	1.00[ASN][1000 genomes]
rs17415557	1.00[ASN][1000 genomes]
rs1887093	1.00[ASN][1000 genomes]
rs28820979	1.00[ASN][1000 genomes]
rs4748809	1.00[ASN][1000 genomes]
rs55927891	1.00[ASN][1000 genomes]
rs56269206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56373296	1.00[ASN][1000 genomes]
rs56768929	1.00[ASN][1000 genomes]
rs57036965	1.00[ASN][1000 genomes]
rs57074189	1.00[ASN][1000 genomes]
rs57920220	1.00[ASN][1000 genomes]
rs57965592	1.00[ASN][1000 genomes]
rs58253107	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402183	1.00[ASN][1000 genomes]
rs59759821	1.00[ASN][1000 genomes]
rs60327547	1.00[ASN][1000 genomes]
rs61377954	1.00[ASN][1000 genomes]
rs6482211	1.00[ASN][1000 genomes]
rs6482216	0.89[EUR][1000 genomes]
rs6482218	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073403	0.92[EUR][1000 genomes]
rs7078635	1.00[ASN][1000 genomes]
rs7084761	1.00[ASN][1000 genomes]
rs72814829	1.00[ASN][1000 genomes]
rs72814833	1.00[ASN][1000 genomes]
rs73598529	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598532	1.00[ASN][1000 genomes]
rs73598533	1.00[ASN][1000 genomes]
rs74123043	1.00[ASN][1000 genomes]
rs74123046	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74123049	1.00[ASN][1000 genomes]
rs74123050	1.00[ASN][1000 genomes]
rs74123051	1.00[ASN][1000 genomes]
rs7893537	0.94[EUR][1000 genomes]
rs7911096	0.94[EUR][1000 genomes]
rs7919655	1.00[ASN][1000 genomes]
rs7921007	0.94[EUR][1000 genomes]
rs7923274	0.92[EUR][1000 genomes]
rs943192	1.00[ASN][1000 genomes]
rs943193	1.00[ASN][1000 genomes]
rs9663298	0.94[EUR][1000 genomes]
rs9787428	1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22725200-22727200	Active TSS	Brain Germinal Matrix	brain
2	chr10:22725200-22727200	Active TSS	Rectal Smooth Muscle	rectum
3	chr10:22725200-22727400	Active TSS	Brain Cingulate Gyrus	brain
4	chr10:22725200-22727400	Active TSS	HSMMtube	muscle
5	chr10:22725400-22727200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:22725400-22727200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr10:22725400-22727200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:22725400-22727200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:22725400-22727200	Active TSS	Brain Angular Gyrus	brain
10	chr10:22725400-22727200	Active TSS	Fetal Brain Female	brain
11	chr10:22725400-22727200	Active TSS	Fetal Kidney	kidney
12	chr10:22725400-22727400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:22725400-22727400	Flanking Active TSS	HMEC	breast
14	chr10:22725400-22727600	Active TSS	Left Ventricle	heart
15	chr10:22725400-22727600	Active TSS	Psoas Muscle	Psoas
16	chr10:22725400-22727600	Active TSS	Right Atrium	heart
17	chr10:22725400-22727800	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr10:22725600-22727200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:22725600-22727200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr10:22725600-22727200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:22725600-22727200	Active TSS	Fetal Intestine Large	intestine
22	chr10:22725600-22727200	Active TSS	Lung	lung
23	chr10:22725600-22727200	Active TSS	Right Ventricle	heart
24	chr10:22725600-22727200	Active TSS	Stomach Mucosa	stomach
25	chr10:22725600-22727400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr10:22725600-22727400	Active TSS	Aorta	Aorta
27	chr10:22725600-22727400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:22725600-22727400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr10:22725600-22727400	Active TSS	Fetal Muscle Trunk	muscle
30	chr10:22725600-22727400	Active TSS	Ovary	ovary
31	chr10:22725600-22727400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr10:22725600-22727400	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:22725600-22727400	Active TSS	HSMM	muscle
34	chr10:22725600-22727600	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:22725600-22727600	Active TSS	Brain Anterior Caudate	brain
36	chr10:22725600-22727800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr10:22725800-22727200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:22725800-22727200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:22725800-22727200	Active TSS	Fetal Lung	lung
40	chr10:22725800-22727200	Active TSS	Pancreas	Pancrea
41	chr10:22725800-22727200	Active TSS	NHDF-Ad	bronchial
42	chr10:22725800-22727400	Active TSS	Brain Hippocampus Middle	brain
43	chr10:22725800-22727600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:22725800-22727600	Flanking Bivalent TSS/Enh	Dnd41	blood
45	chr10:22725800-22727600	Active TSS	NHLF	lung
46	chr10:22726000-22727200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22726000-22727200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:22726200-22727400	Active TSS	Fetal Brain Male	brain
49	chr10:22726200-22728200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:22726400-22727200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links