Variant report

Variant	rs12248190
Chromosome Location	chr10:22743466-22743467
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22715881..22717864-chr10:22742610..22744631,2	K562	blood:
2	chr10:22633393..22635015-chr10:22743176..22745218,2	K562	blood:

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap]
rs10508646	0.92[EUR][1000 genomes]
rs10508647	1.00[GIH][hapmap]
rs10828309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012993	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11012994	1.00[CHB][hapmap]
rs11012998	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	0.89[EUR][1000 genomes]
rs11013012	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812583	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243038	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247258	1.00[CHD][hapmap]
rs12251063	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12251462	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs12256968	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258371	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265492	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265728	1.00[CHB][hapmap]
rs1539322	1.00[CHD][hapmap]
rs16922235	1.00[CHD][hapmap]
rs16922285	1.00[CHB][hapmap]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs56269206	0.97[EUR][1000 genomes]
rs58253107	0.89[EUR][1000 genomes]
rs58554507	0.94[EUR][1000 genomes]
rs6482210	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs6482211	0.89[AMR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6482214	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6482216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482218	0.92[EUR][1000 genomes]
rs7069337	1.00[CHD][hapmap]
rs7073403	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079531	1.00[CHB][hapmap]
rs7079548	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MKK][hapmap];1.00[ASN][1000 genomes]
rs7080269	1.00[ASN][1000 genomes]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs73598518	1.00[ASN][1000 genomes]
rs73598529	0.97[EUR][1000 genomes]
rs74123046	0.97[EUR][1000 genomes]
rs74123047	0.97[EUR][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap]
rs7911096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap]
rs7920038	1.00[CHD][hapmap]
rs7921007	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923274	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9663298	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22742400-22743600	Enhancers	Fetal Heart	heart
2	chr10:22742400-22743800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:22742600-22743600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:22742800-22743600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:22742800-22744800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:22743000-22743800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:22743000-22744400	Enhancers	K562	blood
8	chr10:22743200-22744600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:22743200-22744600	Enhancers	Primary B cells from cord blood	blood
10	chr10:22743400-22743600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:22743400-22743800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:22743400-22743800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:22743400-22743800	Enhancers	Brain Hippocampus Middle	brain
14	chr10:22743400-22744000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:22743400-22744600	Enhancers	GM12878-XiMat	blood
16	chr10:22743400-22748400	Weak transcription	HSMMtube	muscle

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