Variant report

Variant	rs1539322
Chromosome Location	chr10:22705775-22705776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22704943..22706985-chr10:23343129..23346102,2	K562	blood:
2	chr10:22705475..22707462-chr10:22724469..22726250,2	MCF-7	breast:
3	chr10:22703750..22705879-chr10:22709619..22712121,2	K562	blood:
4	chr10:22698472..22701453-chr10:22704172..22708378,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10828306	0.87[EUR][1000 genomes]
rs11012937	0.87[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs11012977	0.87[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11012993	1.00[CHD][hapmap]
rs11013010	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs11552445	0.87[EUR][1000 genomes]
rs11813246	0.94[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11817311	0.87[EUR][1000 genomes]
rs11817811	0.81[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12243038	1.00[CHD][hapmap]
rs12247258	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs12248190	1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12253249	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12261027	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12265492	1.00[CHD][hapmap]
rs1342317	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs57283505	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs57753470	0.87[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.87[EUR][1000 genomes]
rs58340985	0.87[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs6482214	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs7069337	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071015	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7072212	0.87[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7079548	1.00[CHD][hapmap]
rs7086239	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7089954	1.00[MEX][hapmap]
rs7092483	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7094297	0.87[EUR][1000 genomes]
rs7096866	0.87[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7358250	0.87[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.87[EUR][1000 genomes]
rs73598507	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73598508	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7901473	0.81[EUR][1000 genomes]
rs7904538	0.87[EUR][1000 genomes]
rs7907844	0.87[EUR][1000 genomes]
rs7909597	0.87[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7919200	0.87[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs7921358	0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1539322	NUP210	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22700400-22706000	Weak transcription	K562	blood

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