Variant report

Variant	rs7907844
Chromosome Location	chr10:22684235-22684236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22605107..22607206-chr10:22684172..22685842,2	K562	blood:
2	chr10:22683313..22685564-chr10:22697798..22700446,2	K562	blood:
3	chr10:22629355..22631350-chr10:22682148..22684740,2	MCF-7	breast:
4	chr10:22684019..22686176-chr10:22877333..22879550,2	K562	blood:
5	chr10:22627115..22631323-chr10:22682450..22686909,4	K562	blood:
6	chr10:22684064..22687261-chr10:22697184..22700898,4	K562	blood:
7	chr10:22603691..22608005-chr10:22684172..22688528,4	K562	blood:

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10828306	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012937	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012952	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012962	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012972	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012978	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012980	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012989	0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11552445	1.00[EUR][1000 genomes]
rs11813246	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11814745	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817811	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247258	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12253249	0.94[EUR][1000 genomes]
rs12261027	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1342317	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539322	0.87[EUR][1000 genomes]
rs16922217	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922235	0.93[EUR][1000 genomes]
rs2066354	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363568	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	0.81[EUR][1000 genomes]
rs57283505	1.00[EUR][1000 genomes]
rs57753470	1.00[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58340985	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482213	0.81[EUR][1000 genomes]
rs6482214	0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7069337	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070356	0.87[EUR][1000 genomes]
rs7071015	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072212	0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073377	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074430	0.86[EUR][1000 genomes]
rs7074847	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077927	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078252	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086718	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092483	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094297	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096866	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099268	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099308	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358106	0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358250	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598507	1.00[EUR][1000 genomes]
rs73598508	1.00[EUR][1000 genomes]
rs73598512	0.87[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	1.00[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	1.00[EUR][1000 genomes]
rs7901473	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904538	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904821	0.87[EUR][1000 genomes]
rs7909597	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7918271	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919200	1.00[EUR][1000 genomes]
rs7920038	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921358	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22684000-22684400	ZNF genes & repeats	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links