Variant report

Variant	rs12241555
Chromosome Location	chr10:22674833-22674834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22669182..22672766-chr10:22673128..22676777,6	K562	blood:
2	chr10:22665432..22667903-chr10:22673879..22675419,2	K562	blood:
3	chr10:22666585..22669075-chr10:22673726..22675313,2	K562	blood:
4	chr10:22669182..22672763-chr10:22673128..22677025,4	K562	blood:
5	chr10:22609291..22611317-chr10:22672307..22675150,2	K562	blood:
6	chr10:22611957..22613546-chr10:22673769..22676392,2	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10828306	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012937	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013010	1.00[CEU][hapmap]
rs11552445	1.00[EUR][1000 genomes]
rs11813246	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817311	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817811	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12251462	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs12253249	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12261027	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs57283505	1.00[EUR][1000 genomes]
rs57753470	1.00[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58340985	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482214	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7071015	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096866	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358250	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598507	1.00[EUR][1000 genomes]
rs73598508	1.00[EUR][1000 genomes]
rs73598512	0.87[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	1.00[EUR][1000 genomes]
rs7901473	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904821	0.87[EUR][1000 genomes]
rs7907844	0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909597	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919200	1.00[EUR][1000 genomes]
rs7920038	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921358	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22671200-22675400	Weak transcription	K562	blood
2	chr10:22673200-22677400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22674400-22677600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:22674600-22675600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:22674800-22675800	Enhancers	Fetal Heart	heart

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