Variant report

Variant	rs7074847
Chromosome Location	chr10:22675857-22675858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:22675470-22675891	HL-60	blood:	n/a	n/a
2	TEAD4	chr10:22675465-22675858	K562	blood:	n/a	n/a
3	RCOR1	chr10:22675470-22675857	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22669182..22672766-chr10:22673128..22676777,6	K562	blood:
2	chr10:22626594..22629455-chr10:22675560..22678506,3	K562	blood:
3	chr10:22669182..22672763-chr10:22673128..22677025,4	K562	blood:
4	chr10:22611957..22613546-chr10:22673769..22676392,2	K562	blood:

No data

Variant related genes	Relation type
SPAG6	TF binding region

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10828306	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012937	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013010	1.00[CEU][hapmap]
rs11552445	1.00[EUR][1000 genomes]
rs11813246	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817811	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12253249	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12261027	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs57283505	1.00[EUR][1000 genomes]
rs57753470	1.00[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58340985	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs6482214	1.00[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7071015	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072212	0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094297	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096866	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358250	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598507	1.00[EUR][1000 genomes]
rs73598508	1.00[EUR][1000 genomes]
rs73598512	0.87[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	1.00[EUR][1000 genomes]
rs7901473	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904538	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904821	0.87[EUR][1000 genomes]
rs7907844	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909597	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919200	1.00[EUR][1000 genomes]
rs7920038	1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921358	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22673200-22677400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22674400-22677600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:22675200-22676000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:22675800-22678600	Weak transcription	K562	blood

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