Variant report

Variant	rs11012977
Chromosome Location	chr10:22671683-22671684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22616739..22619022-chr10:22670720..22672408,2	K562	blood:
2	chr10:22660334..22662365-chr10:22670302..22671932,2	K562	blood:
3	chr10:22669182..22672766-chr10:22673128..22676777,6	K562	blood:
4	chr10:22629235..22631323-chr10:22671655..22674610,2	MCF-7	breast:
5	chr10:22669182..22672763-chr10:22673128..22677025,4	K562	blood:
6	chr10:22659512..22661834-chr10:22669700..22671932,2	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10828306	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012937	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012952	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012972	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012978	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012980	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012989	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11552445	1.00[EUR][1000 genomes]
rs11813246	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11814745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817311	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817811	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247258	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12251462	0.84[AFR][1000 genomes]
rs12253249	0.94[EUR][1000 genomes]
rs12261027	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1342317	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539322	0.87[EUR][1000 genomes]
rs16922217	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922235	0.93[EUR][1000 genomes]
rs2066354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	0.81[EUR][1000 genomes]
rs57283505	1.00[EUR][1000 genomes]
rs57753470	1.00[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58340985	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482213	0.81[EUR][1000 genomes]
rs6482214	0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7069337	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070356	0.87[EUR][1000 genomes]
rs7071015	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073377	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074430	0.86[EUR][1000 genomes]
rs7074847	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077927	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078252	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086718	1.00[EUR][1000 genomes]
rs7092483	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096866	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099268	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358106	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358250	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598507	1.00[EUR][1000 genomes]
rs73598508	1.00[EUR][1000 genomes]
rs73598512	0.87[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	1.00[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	1.00[EUR][1000 genomes]
rs7901473	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904821	0.87[EUR][1000 genomes]
rs7907844	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909597	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7918271	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919200	1.00[EUR][1000 genomes]
rs7920038	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921358	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22671000-22674400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:22671200-22675400	Weak transcription	K562	blood

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