Variant report

Variant	rs7071015
Chromosome Location	chr10:22678938-22678939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:22678707-22679750	K562	blood:	n/a	chr10:22679720-22679728
2	POLR2A	chr10:22678723-22679105	K562	blood:	n/a	n/a
3	CEBPD	chr10:22678745-22679525	K562	blood:	n/a	n/a
4	HDAC2	chr10:22678712-22678994	K562	blood:	n/a	n/a
5	ZBTB7A	chr10:22678827-22678974	K562	blood:	n/a	n/a
6	STAT5A	chr10:22678674-22679426	K562	blood:	n/a	n/a
7	ATF1	chr10:22678788-22679434	K562	blood:	n/a	n/a
8	TBL1XR1	chr10:22678678-22679591	K562	blood:	n/a	n/a
9	EP300	chr10:22678665-22679831	K562	blood:	n/a	n/a
10	MYC	chr10:22678716-22679481	K562	blood:	n/a	chr10:22678742-22678753
11	TEAD4	chr10:22678615-22679625	K562	blood:	n/a	n/a
12	EP300	chr10:22678761-22679219	K562	blood:	n/a	n/a
13	JUN	chr10:22678752-22679479	K562	blood:	n/a	n/a
14	SMARCA4	chr10:22678582-22679425	K562	blood:	n/a	n/a
15	STAT5A	chr10:22678711-22679116	K562	blood:	n/a	n/a
16	GATA2	chr10:22678702-22679158	K562	blood:	n/a	chr10:22678946-22678962 chr10:22679101-22679111 chr10:22678950-22678959 chr10:22678949-22678959
17	NR2F2	chr10:22678590-22679378	K562	blood:	n/a	chr10:22679164-22679179
18	MYC	chr10:22678657-22679517	K562	blood:	n/a	chr10:22678742-22678753
19	CCNT2	chr10:22678804-22679064	K562	blood:	n/a	n/a
20	CEBPB	chr10:22678636-22679818	K562	blood:	n/a	chr10:22679720-22679728
21	RCOR1	chr10:22678650-22679558	K562	blood:	n/a	n/a
22	PML	chr10:22678677-22679504	K562	blood:	n/a	n/a
23	TRIM28	chr10:22678533-22679521	K562	blood:	n/a	n/a
24	NR2F2	chr10:22678659-22679459	K562	blood:	n/a	chr10:22679164-22679179
25	MAX	chr10:22678697-22679005	K562	blood:	n/a	chr10:22678742-22678753
26	ARID3A	chr10:22678644-22679353	K562	blood:	n/a	n/a
27	MAZ	chr10:22678763-22679540	K562	blood:	n/a	n/a
28	TEAD4	chr10:22678657-22679443	K562	blood:	n/a	n/a
29	POLR2A	chr10:22678743-22679472	K562	blood:	n/a	n/a
30	GATA1	chr10:22678742-22679515	PBDE	blood:	n/a	chr10:22678946-22678962 chr10:22679101-22679111 chr10:22678949-22678959 chr10:22678950-22678959
31	MAFK	chr10:22678832-22679348	K562	blood:	n/a	n/a
32	ZNF384	chr10:22678764-22679294	K562	blood:	n/a	n/a
33	TAL1	chr10:22678645-22679215	K562	blood:	n/a	n/a
34	JUND	chr10:22678729-22679604	K562	blood:	n/a	n/a
35	MAX	chr10:22678631-22679698	K562	blood:	n/a	chr10:22678742-22678753
36	PML	chr10:22678701-22679469	K562	blood:	n/a	n/a
37	CUX1	chr10:22678520-22679491	K562	blood:	n/a	n/a
38	ZMIZ1	chr10:22678766-22679534	K562	blood:	n/a	n/a
39	BHLHE40	chr10:22678737-22679445	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:22625398..22631647-chr10:22676300..22682265,8	K562	blood:
2	chr10:22678662..22680456-chr10:22690935..22692529,2	K562	blood:
3	chr10:22677540..22679205-chr10:22717546..22719752,2	K562	blood:
4	chr10:22607781..22611461-chr10:22678220..22681015,4	K562	blood:
5	chr10:22676854..22679698-chr10:22689604..22691174,3	K562	blood:
6	chr10:22631912..22634893-chr10:22676215..22679153,2	MCF-7	breast:
7	chr10:22662789..22665601-chr10:22678591..22680549,3	K562	blood:
8	chr10:22664101..22666356-chr10:22678595..22680288,2	K562	blood:
9	chr10:22608333..22611559-chr10:22678806..22682635,4	K562	blood:
10	chr10:22611886..22615757-chr10:22677839..22683321,7	K562	blood:

Variant related genes	Relation type
SPAG6	TF binding region
ENSG00000077327	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10828306	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012937	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012977	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11013010	1.00[CEU][hapmap]
rs11552445	0.94[EUR][1000 genomes]
rs11813246	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817311	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11817811	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12253249	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12261027	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28496146	0.81[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap]
rs57283505	0.94[EUR][1000 genomes]
rs57753470	0.94[EUR][1000 genomes]
rs57847001	0.81[EUR][1000 genomes]
rs58046964	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58340985	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60602527	0.81[EUR][1000 genomes]
rs60837021	0.81[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap]
rs6482214	1.00[CEU][hapmap]
rs7069337	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7072212	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086239	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7094297	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7096866	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7358250	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73596598	0.81[EUR][1000 genomes]
rs73596599	0.81[EUR][1000 genomes]
rs73596601	0.81[EUR][1000 genomes]
rs73598505	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73598507	0.94[EUR][1000 genomes]
rs73598508	0.94[EUR][1000 genomes]
rs73598512	0.81[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7895751	0.94[EUR][1000 genomes]
rs7901473	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7904538	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904821	0.81[EUR][1000 genomes]
rs7907844	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7909597	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919200	0.94[EUR][1000 genomes]
rs7920038	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7921358	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22678800-22679800	Flanking Active TSS	K562	blood

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