Variant report

Variant	rs11012952
Chromosome Location	chr10:22628423-22628424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22290966..22293742-chr10:22628058..22631636,3	MCF-7	breast:
2	chr10:22603818..22606688-chr10:22628346..22630666,3	MCF-7	breast:
3	chr10:22627151..22628805-chr10:22841570..22843241,2	K562	blood:
4	chr10:22625398..22631647-chr10:22676300..22682265,8	K562	blood:
5	chr10:22608172..22617536-chr10:22624000..22632852,24	MCF-7	breast:
6	chr10:22626594..22629455-chr10:22675560..22678506,3	K562	blood:
7	chr10:22626106..22628685-chr10:22802579..22804183,2	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000136770	Chromatin interaction
ENSG00000148444	Chromatin interaction
ENSG00000077327	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10828306	1.00[EUR][1000 genomes]
rs11012937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11012977	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013010	1.00[CEU][hapmap]
rs11552445	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813246	0.94[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817311	0.92[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817811	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11817873	0.81[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12251462	0.91[YRI][hapmap]
rs12253249	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12261027	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16922217	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28496146	0.86[EUR][1000 genomes]
rs3004	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs57283505	1.00[EUR][1000 genomes]
rs57753470	1.00[EUR][1000 genomes]
rs57847001	0.86[EUR][1000 genomes]
rs58046964	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58340985	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884708	0.80[EUR][1000 genomes]
rs60602527	0.86[EUR][1000 genomes]
rs60837021	0.86[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482212	1.00[CEU][hapmap]
rs6482213	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482214	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482215	0.81[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7071015	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072212	1.00[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074430	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7078252	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7079531	0.81[EUR][1000 genomes]
rs7086239	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094297	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096866	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7358250	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596598	0.86[EUR][1000 genomes]
rs73596599	0.86[EUR][1000 genomes]
rs73596601	0.86[EUR][1000 genomes]
rs73598505	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598507	1.00[EUR][1000 genomes]
rs73598508	1.00[EUR][1000 genomes]
rs73598512	0.87[EUR][1000 genomes]
rs73598513	0.81[EUR][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7895113	0.80[EUR][1000 genomes]
rs7895751	1.00[EUR][1000 genomes]
rs7901473	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7904538	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904821	0.87[EUR][1000 genomes]
rs7907844	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909597	1.00[EUR][1000 genomes]
rs7914254	0.81[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919200	1.00[EUR][1000 genomes]
rs7920038	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921358	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv550207	chr10:22605112-22631256	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv3512115	chr10:22628355-22629590	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	esv3512116	chr10:22628355-22629590	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22619200-22628600	Weak transcription	Hela-S3	cervix
2	chr10:22626200-22629000	Weak transcription	Right Ventricle	heart
3	chr10:22626200-22629200	Weak transcription	Pancreas	Pancrea
4	chr10:22627200-22628600	Enhancers	K562	blood
5	chr10:22627600-22629000	Weak transcription	Aorta	Aorta
6	chr10:22628200-22628600	Weak transcription	Psoas Muscle	Psoas
7	chr10:22628200-22628800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr10:22628200-22628800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:22628400-22628600	Bivalent Enhancer	GM12878-XiMat	blood
10	chr10:22628400-22628800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
11	chr10:22628400-22628800	Bivalent Enhancer	Brain Anterior Caudate	brain
12	chr10:22628400-22629200	Flanking Active TSS	Dnd41	blood

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