Variant report

Variant	rs12251462
Chromosome Location	chr10:22715057-22715058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22658015..22659557-chr10:22714659..22717095,2	MCF-7	breast:
2	chr10:22608826..22611413-chr10:22713054..22716443,3	MCF-7	breast:
3	chr10:22712716..22714510-chr10:22714720..22716242,2	K562	blood:
4	chr10:22603374..22606255-chr10:22714373..22717280,2	MCF-7	breast:
5	chr10:22628262..22631031-chr10:22713348..22715922,3	K562	blood:
6	chr10:22710078..22712429-chr10:22713778..22717692,5	K562	blood:
7	chr10:22712873..22715927-chr10:22717373..22719011,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000148444	Chromatin interaction
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10828309	1.00[CEU][hapmap]
rs11012952	0.91[YRI][hapmap]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap];0.80[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11012977	0.84[AFR][1000 genomes]
rs11012978	0.87[YRI][hapmap]
rs11012980	1.00[CHD][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11012989	1.00[CHD][hapmap]
rs11012993	1.00[CHD][hapmap]
rs11012998	0.81[AMR][1000 genomes]
rs11814745	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11817311	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11817811	0.84[AFR][1000 genomes]
rs12241555	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs12243038	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs12247258	1.00[CHD][hapmap]
rs12248190	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs12256968	0.81[AMR][1000 genomes]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12265492	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[AMR][1000 genomes]
rs1342317	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1539322	1.00[CHD][hapmap]
rs16922217	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs16922235	1.00[CHD][hapmap]
rs2066354	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs2363568	1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs3004	1.00[CHD][hapmap]
rs6482209	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs6482210	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482211	0.89[EUR][1000 genomes]
rs6482213	1.00[CHD][hapmap]
rs6482214	1.00[CHD][hapmap]
rs6482216	1.00[CEU][hapmap]
rs7069337	1.00[CHD][hapmap]
rs7073377	0.85[AFR][1000 genomes]
rs7079548	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[EUR][1000 genomes]
rs7080269	0.86[EUR][1000 genomes]
rs7086239	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7092483	0.87[YRI][hapmap]
rs7099268	1.00[CHD][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7358106	1.00[CHD][hapmap]
rs7358250	0.86[AFR][1000 genomes]
rs73598505	0.85[AFR][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CEU][hapmap]
rs7904538	0.85[AFR][1000 genomes]
rs7911096	1.00[CEU][hapmap]
rs7918271	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7920038	1.00[CHD][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22706600-22715800	Weak transcription	K562	blood
2	chr10:22714000-22718200	Weak transcription	GM12878-XiMat	blood
3	chr10:22714600-22725200	Weak transcription	Brain Anterior Caudate	brain

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