Variant report

Variant	rs7079548
Chromosome Location	chr10:22723529-22723530
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22716047..22718111-chr10:22722853..22724530,2	MCF-7	breast:
2	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
3	chr10:22721771..22724573-chr10:22724819..22726354,2	K562	blood:
4	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
5	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap]
rs10828309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012993	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11012994	1.00[CHB][hapmap]
rs11012998	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013012	1.00[ASN][1000 genomes]
rs11812583	1.00[ASN][1000 genomes]
rs12243038	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MKK][hapmap];1.00[ASN][1000 genomes]
rs12247258	1.00[CHD][hapmap]
rs12248190	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MKK][hapmap];1.00[ASN][1000 genomes]
rs12251462	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[EUR][1000 genomes]
rs12256968	1.00[ASN][1000 genomes]
rs12258371	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12265492	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[ASN][1000 genomes]
rs12265728	1.00[CHB][hapmap]
rs1539322	1.00[CHD][hapmap]
rs16922235	1.00[CHD][hapmap]
rs16922285	1.00[CHB][hapmap]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6482210	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs6482211	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6482214	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6482216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7069337	1.00[CHD][hapmap]
rs7073403	1.00[ASN][1000 genomes]
rs7079531	1.00[CHB][hapmap]
rs7080269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs73598518	1.00[ASN][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap]
rs7911096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap]
rs7920038	1.00[CHD][hapmap]
rs7921007	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9663298	1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22714600-22725200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:22716600-22724400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:22717000-22725400	Weak transcription	Placenta	Placenta
4	chr10:22718000-22725400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:22719000-22723600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:22719200-22724400	Weak transcription	Pancreas	Pancrea
7	chr10:22719200-22724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:22719200-22725400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:22719200-22725400	Weak transcription	Psoas Muscle	Psoas
10	chr10:22719400-22724400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:22719400-22725200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:22719600-22724400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:22720000-22725200	Weak transcription	GM12878-XiMat	blood
14	chr10:22720200-22723600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:22722000-22725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:22722200-22723800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:22722200-22724400	Enhancers	NHDF-Ad	bronchial
18	chr10:22722200-22725200	Enhancers	HSMM	muscle
19	chr10:22722200-22725400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:22722400-22724600	Enhancers	Osteobl	bone
21	chr10:22722600-22724000	Enhancers	NHEK	skin
22	chr10:22722600-22724400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:22722600-22724600	Enhancers	NH-A	brain
24	chr10:22722600-22725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:22722600-22725400	Enhancers	NHLF	lung
26	chr10:22722800-22723800	Enhancers	Hela-S3	cervix
27	chr10:22722800-22723800	Enhancers	HUVEC	blood vessel
28	chr10:22722800-22725200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:22723000-22723800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:22723000-22723800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:22723000-22724000	Enhancers	HSMMtube	muscle
32	chr10:22723000-22725200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:22723000-22725200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:22723200-22723600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:22723200-22723600	Enhancers	Adipose Nuclei	Adipose
36	chr10:22723200-22724200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:22723200-22725400	Enhancers	HMEC	breast
40	chr10:22723400-22723800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:22723400-22723800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:22723400-22723800	Enhancers	A549	lung
43	chr10:22723400-22724200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr10:22723400-22724800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:22723400-22725200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:22723400-22725200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:22723400-22725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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