Variant report

Variant	rs7918879
Chromosome Location	chr10:22725171-22725172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
2	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
3	chr10:22720460..22723028-chr10:22724618..22727294,3	MCF-7	breast:
4	chr10:22309684..22311536-chr10:22724578..22726219,2	MCF-7	breast:
5	chr10:22614072..22616553-chr10:22723702..22726327,3	MCF-7	breast:
6	chr10:22705475..22707462-chr10:22724469..22726250,2	MCF-7	breast:
7	chr10:22721771..22724573-chr10:22724819..22726354,2	K562	blood:
8	chr10:22629205..22631554-chr10:22724869..22726474,2	MCF-7	breast:
9	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
10	chr10:22725102..22726678-chr10:22737694..22740220,2	MCF-7	breast:
11	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
12	chr10:22603581..22606407-chr10:22724519..22726402,2	MCF-7	breast:
13	chr10:22652382..22654198-chr10:22725095..22727355,2	MCF-7	breast:
14	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIP4K2A-1	chr10:22725099-22725521	NONHSAT011750

No data

Variant related genes	Relation type
ENSG00000269897	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000148444	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012931	1.00[EUR][1000 genomes]
rs11012991	1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap]
rs12248190	1.00[CHB][hapmap]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262743	1.00[CHB][hapmap]
rs12265728	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922126	1.00[EUR][1000 genomes]
rs16922139	1.00[EUR][1000 genomes]
rs16922277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3004	1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55869957	1.00[EUR][1000 genomes]
rs6482212	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482214	1.00[CHB][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6482215	1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs7079531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap]
rs73598512	0.89[AFR][1000 genomes]
rs73598513	1.00[ASN][1000 genomes]
rs73598514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598527	1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	1.00[EUR][1000 genomes]
rs74123059	1.00[EUR][1000 genomes]
rs74123070	1.00[EUR][1000 genomes]
rs7893537	1.00[CHB][hapmap]
rs7898929	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	1.00[ASN][1000 genomes]
rs7918856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]
rs9783118	1.00[EUR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22714600-22725200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:22717000-22725400	Weak transcription	Placenta	Placenta
3	chr10:22718000-22725400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:22719200-22725400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:22719200-22725400	Weak transcription	Psoas Muscle	Psoas
6	chr10:22719400-22725200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:22720000-22725200	Weak transcription	GM12878-XiMat	blood
8	chr10:22722000-22725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:22722200-22725200	Enhancers	HSMM	muscle
10	chr10:22722200-22725400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:22722600-22725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:22722600-22725400	Enhancers	NHLF	lung
13	chr10:22722800-22725200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:22723000-22725200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:22723000-22725200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:22723200-22725400	Enhancers	HMEC	breast
19	chr10:22723400-22725200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:22723400-22725200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:22723400-22725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:22723600-22725200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:22723600-22725200	Weak transcription	Adipose Nuclei	Adipose
24	chr10:22723600-22725400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:22723600-22725600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr10:22723800-22725200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:22723800-22725200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:22723800-22725200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:22723800-22725200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:22723800-22725200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:22723800-22725200	Weak transcription	Stomach Mucosa	stomach
32	chr10:22723800-22725200	Weak transcription	HUVEC	blood vessel
33	chr10:22723800-22725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:22723800-22725800	Weak transcription	A549	lung
35	chr10:22723800-22726000	Weak transcription	Hela-S3	cervix
36	chr10:22724200-22725600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:22724400-22725200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:22724400-22725200	Enhancers	Fetal Brain Female	brain
39	chr10:22724400-22725200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr10:22724400-22725400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:22724400-22725400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:22724400-22725400	Enhancers	Fetal Muscle Leg	muscle
43	chr10:22724600-22725200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr10:22724600-22725200	Enhancers	Fetal Muscle Trunk	muscle
45	chr10:22724600-22725200	Weak transcription	HSMMtube	muscle
46	chr10:22724600-22725400	Enhancers	Primary B cells from peripheral blood	blood
47	chr10:22724600-22725400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:22724600-22725400	Weak transcription	Pancreas	Pancrea
49	chr10:22724600-22725400	Weak transcription	NH-A	brain
50	chr10:22724600-22725600	Enhancers	Fetal Brain Male	brain

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