Variant report

Variant	rs12256920
Chromosome Location	chr10:22740136-22740137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22627926..22632058-chr10:22737838..22740841,3	K562	blood:
2	chr10:22738855..22740957-chr10:22839794..22842697,2	MCF-7	breast:
3	chr10:22725102..22726678-chr10:22737694..22740220,2	MCF-7	breast:
4	chr10:22732081..22734232-chr10:22738993..22741677,2	K562	blood:
5	chr10:22732732..22735397-chr10:22740047..22741677,2	K562	blood:
6	chr10:22627926..22632058-chr10:22736197..22740841,5	K562	blood:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012931	1.00[EUR][1000 genomes]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012991	1.00[ASN][1000 genomes]
rs11012993	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012996	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012997	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012999	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12247258	1.00[CHD][hapmap]
rs12248190	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CHB][hapmap]
rs12265492	1.00[CHD][hapmap]
rs12265728	1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539322	1.00[CHD][hapmap]
rs16922126	1.00[EUR][1000 genomes]
rs16922139	1.00[EUR][1000 genomes]
rs16922235	1.00[CHD][hapmap]
rs16922277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs55869957	1.00[EUR][1000 genomes]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6482214	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6482215	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs7069337	1.00[CHD][hapmap]
rs7079531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs73598513	1.00[ASN][1000 genomes]
rs73598514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598527	1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	1.00[EUR][1000 genomes]
rs74123059	1.00[EUR][1000 genomes]
rs74123070	1.00[EUR][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CHB][hapmap]
rs7898929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7918856	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap]
rs9783118	1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22739000-22743000	Weak transcription	Brain Inferior Temporal Lobe	brain

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