Variant report

Variant	rs6482210
Chromosome Location	chr10:22717155-22717156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22716118..22719238-chr10:23342778..23345832,4	K562	blood:
2	chr10:22605892..22607485-chr10:22715197..22717348,2	MCF-7	breast:
3	chr10:22715881..22717864-chr10:22742610..22744631,2	K562	blood:
4	chr10:22706851..22708578-chr10:22715149..22717665,3	MCF-7	breast:
5	chr10:22716047..22718111-chr10:22722853..22724530,2	MCF-7	breast:
6	chr10:22678027..22680919-chr10:22716611..22719023,2	MCF-7	breast:
7	chr10:22709252..22711652-chr10:22715870..22718008,2	MCF-7	breast:
8	chr10:22603374..22606255-chr10:22714373..22717280,2	MCF-7	breast:
9	chr10:22610143..22612780-chr10:22715358..22717452,2	MCF-7	breast:
10	chr10:22607877..22611545-chr10:22715251..22718159,3	K562	blood:
11	chr10:22710078..22712429-chr10:22713778..22717692,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000148444	Chromatin interaction
ENSG00000077327	Chromatin interaction

rs_ID	r²[population]
rs10828309	1.00[CEU][hapmap]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012993	1.00[CHD][hapmap]
rs12243038	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs12247258	1.00[CHD][hapmap]
rs12248190	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap]
rs12251462	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12258371	0.81[AMR][1000 genomes]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CEU][hapmap]
rs12265492	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs1539322	1.00[CHD][hapmap]
rs16922235	1.00[CHD][hapmap]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHD][hapmap]
rs6482211	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482213	1.00[CHD][hapmap]
rs6482214	1.00[CHD][hapmap]
rs6482216	1.00[CEU][hapmap]
rs7069337	1.00[CHD][hapmap]
rs7079548	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs7080269	0.90[EUR][1000 genomes]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs7911096	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs7920038	1.00[CHD][hapmap]
rs7921007	0.81[AMR][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22714000-22718200	Weak transcription	GM12878-XiMat	blood
2	chr10:22714600-22725200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:22715600-22717400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:22715600-22717400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:22715600-22717400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:22715600-22717400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:22715600-22719200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:22715600-22719400	Enhancers	HMEC	breast
9	chr10:22715600-22719600	Enhancers	Hela-S3	cervix
10	chr10:22715600-22720200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:22715800-22717200	Enhancers	Fetal Muscle Leg	muscle
12	chr10:22715800-22717400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:22715800-22717400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr10:22715800-22717400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:22715800-22718000	Enhancers	K562	blood
16	chr10:22715800-22719000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:22715800-22719800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:22716000-22717400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr10:22716000-22717400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:22716000-22717600	Flanking Active TSS	A549	lung
21	chr10:22716000-22718600	Enhancers	Fetal Kidney	kidney
22	chr10:22716000-22718800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:22716000-22719000	Enhancers	Osteobl	bone
24	chr10:22716000-22719200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:22716000-22719400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:22716000-22719400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:22716200-22717200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr10:22716200-22717400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:22716200-22717400	Enhancers	Fetal Stomach	stomach
30	chr10:22716200-22718800	Enhancers	NH-A	brain
31	chr10:22716200-22719200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:22716200-22719200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:22716200-22719200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:22716200-22719200	Enhancers	NHLF	lung
35	chr10:22716200-22719400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:22716200-22719600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:22716200-22719800	Enhancers	HUVEC	blood vessel
38	chr10:22716400-22717400	Enhancers	Adipose Nuclei	Adipose
39	chr10:22716400-22717800	Enhancers	Fetal Lung	lung
40	chr10:22716400-22717800	Enhancers	HSMMtube	muscle
41	chr10:22716400-22718000	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr10:22716400-22719200	Enhancers	HSMM	muscle
43	chr10:22716600-22717400	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:22716600-22717600	Enhancers	Fetal Heart	heart
45	chr10:22716600-22718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:22716600-22724400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:22716800-22717200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr10:22716800-22717200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:22716800-22717200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr10:22716800-22717200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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