Variant report

Variant	rs11012993
Chromosome Location	chr10:22727983-22727984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
2	chr10:22604268..22606309-chr10:22726549..22728219,2	MCF-7	breast:
3	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:
4	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
5	chr10:22727625..22729695-chr10:22737615..22739983,2	MCF-7	breast:
6	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000269897	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012931	1.00[EUR][1000 genomes]
rs11012962	1.00[CHD][hapmap]
rs11012972	1.00[CHD][hapmap]
rs11012980	1.00[CHD][hapmap]
rs11012989	1.00[CHD][hapmap]
rs11012991	1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12247258	1.00[CHD][hapmap]
rs12248190	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256920	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261027	1.00[CHD][hapmap]
rs12262743	1.00[CHB][hapmap]
rs12265492	1.00[CHD][hapmap]
rs12265728	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539322	1.00[CHD][hapmap]
rs16922126	1.00[EUR][1000 genomes]
rs16922139	1.00[EUR][1000 genomes]
rs16922235	1.00[CHD][hapmap]
rs16922277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363568	1.00[CHD][hapmap]
rs3004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs55869957	1.00[EUR][1000 genomes]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6482214	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6482215	1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs7069337	1.00[CHD][hapmap]
rs7079531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7099268	1.00[CHD][hapmap]
rs7358106	1.00[CHD][hapmap]
rs73598513	1.00[ASN][1000 genomes]
rs73598514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598527	1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	1.00[EUR][1000 genomes]
rs74123059	1.00[EUR][1000 genomes]
rs74123070	1.00[EUR][1000 genomes]
rs7893132	1.00[CHD][hapmap]
rs7893537	1.00[CHB][hapmap]
rs7898929	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7918856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap]
rs9783118	1.00[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22726200-22728200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:22726400-22728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:22726800-22728000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:22726800-22731400	Weak transcription	Gastric	stomach
5	chr10:22727000-22728000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:22727000-22728000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr10:22727000-22728000	Bivalent Enhancer	HepG2	liver
8	chr10:22727200-22728000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:22727200-22728000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:22727200-22728000	Flanking Active TSS	Rectal Smooth Muscle	rectum
11	chr10:22727200-22728000	Flanking Active TSS	NHDF-Ad	bronchial
12	chr10:22727200-22728200	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:22727200-22728200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:22727200-22728400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:22727400-22728000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr10:22727400-22728000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:22727400-22728000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:22727400-22728000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:22727400-22728000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:22727400-22728000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr10:22727400-22728000	Enhancers	Fetal Thymus	thymus
22	chr10:22727400-22728000	Enhancers	Lung	lung
23	chr10:22727400-22728000	Enhancers	Pancreas	Pancrea
24	chr10:22727400-22728000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:22727400-22728000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr10:22727400-22728000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr10:22727400-22728000	Enhancers	HMEC	breast
28	chr10:22727400-22728000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
29	chr10:22727400-22728200	Weak transcription	Aorta	Aorta
30	chr10:22727400-22728200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:22727400-22728200	Enhancers	Ovary	ovary
32	chr10:22727400-22732600	Weak transcription	HSMM	muscle
33	chr10:22727600-22728000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr10:22727600-22728000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:22727600-22728000	Enhancers	Adipose Nuclei	Adipose
36	chr10:22727600-22728000	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:22727600-22728000	Enhancers	Esophagus	oesophagus
38	chr10:22727600-22728000	Enhancers	Fetal Stomach	stomach
39	chr10:22727600-22728000	Enhancers	Left Ventricle	heart
40	chr10:22727600-22728000	Flanking Active TSS	Psoas Muscle	Psoas
41	chr10:22727600-22728000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:22727600-22728000	Bivalent Enhancer	Dnd41	blood
43	chr10:22727600-22728000	Enhancers	NHLF	lung
44	chr10:22727600-22728200	Enhancers	Primary B cells from cord blood	blood
45	chr10:22727600-22728200	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr10:22727600-22728200	Enhancers	Fetal Intestine Small	intestine
47	chr10:22727600-22728200	Enhancers	Small Intestine	intestine
48	chr10:22727600-22728200	Enhancers	Thymus	Thymus
49	chr10:22727600-22732000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:22727800-22728000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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