Variant report

Variant	rs73598520
Chromosome Location	chr10:22726607-22726608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
2	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
3	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
4	chr10:22654035..22655946-chr10:22725226..22727293,2	MCF-7	breast:
5	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
6	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
7	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
8	chr10:22720460..22723028-chr10:22724618..22727294,3	MCF-7	breast:
9	chr10:22517700..22519413-chr10:22725254..22727174,2	MCF-7	breast:
10	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
11	chr10:22604268..22606309-chr10:22726549..22728219,2	MCF-7	breast:
12	chr10:22725102..22726678-chr10:22737694..22740220,2	MCF-7	breast:
13	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
14	chr10:22725325..22727863-chr10:22750975..22754414,4	MCF-7	breast:
15	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
16	chr10:22707988..22710566-chr10:22725566..22727431,2	MCF-7	breast:
17	chr10:22652382..22654198-chr10:22725095..22727355,2	MCF-7	breast:
18	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000272366	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10508644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012931	1.00[EUR][1000 genomes]
rs11012991	1.00[ASN][1000 genomes]
rs11012993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922126	1.00[EUR][1000 genomes]
rs16922139	1.00[EUR][1000 genomes]
rs16922277	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3004	1.00[ASN][1000 genomes]
rs55869957	1.00[EUR][1000 genomes]
rs6482213	1.00[ASN][1000 genomes]
rs6482214	1.00[ASN][1000 genomes]
rs6482215	1.00[ASN][1000 genomes]
rs7079531	1.00[ASN][1000 genomes]
rs73598513	1.00[ASN][1000 genomes]
rs73598514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598521	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598526	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598527	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	1.00[EUR][1000 genomes]
rs74123059	1.00[EUR][1000 genomes]
rs74123070	1.00[EUR][1000 genomes]
rs7898929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914254	1.00[ASN][1000 genomes]
rs7918856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]
rs9783118	1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22724600-22727000	Active TSS	Osteobl	bone
2	chr10:22725200-22726800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr10:22725200-22727000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:22725200-22727000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:22725200-22727000	Active TSS	Brain Substantia Nigra	brain
6	chr10:22725200-22727200	Active TSS	Brain Germinal Matrix	brain
7	chr10:22725200-22727200	Active TSS	Rectal Smooth Muscle	rectum
8	chr10:22725200-22727400	Active TSS	Brain Cingulate Gyrus	brain
9	chr10:22725200-22727400	Active TSS	HSMMtube	muscle
10	chr10:22725400-22726800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:22725400-22726800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:22725400-22726800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:22725400-22726800	Active TSS	Duodenum Mucosa	Duodenum
14	chr10:22725400-22727000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:22725400-22727000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:22725400-22727000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:22725400-22727000	Active TSS	Sigmoid Colon	Sigmoid Colon
18	chr10:22725400-22727200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:22725400-22727200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:22725400-22727200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:22725400-22727200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:22725400-22727200	Active TSS	Brain Angular Gyrus	brain
23	chr10:22725400-22727200	Active TSS	Fetal Brain Female	brain
24	chr10:22725400-22727200	Active TSS	Fetal Kidney	kidney
25	chr10:22725400-22727400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:22725400-22727400	Flanking Active TSS	HMEC	breast
27	chr10:22725400-22727600	Active TSS	Left Ventricle	heart
28	chr10:22725400-22727600	Active TSS	Psoas Muscle	Psoas
29	chr10:22725400-22727600	Active TSS	Right Atrium	heart
30	chr10:22725400-22727800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr10:22725600-22726800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:22725600-22726800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:22725600-22726800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:22725600-22726800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr10:22725600-22726800	Active TSS	Fetal Muscle Leg	muscle
36	chr10:22725600-22726800	Active TSS	Fetal Thymus	thymus
37	chr10:22725600-22726800	Active TSS	Gastric	stomach
38	chr10:22725600-22727000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
39	chr10:22725600-22727000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:22725600-22727000	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr10:22725600-22727000	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr10:22725600-22727000	Active TSS	Colon Smooth Muscle	Colon
43	chr10:22725600-22727000	Active TSS	Fetal Heart	heart
44	chr10:22725600-22727000	Active TSS	Fetal Intestine Small	intestine
45	chr10:22725600-22727000	Active TSS	Fetal Stomach	stomach
46	chr10:22725600-22727200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:22725600-22727200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr10:22725600-22727200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:22725600-22727200	Active TSS	Fetal Intestine Large	intestine
50	chr10:22725600-22727200	Active TSS	Lung	lung

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