Variant report

Variant	rs16922139
Chromosome Location	chr10:22538985-22538986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22538223..22543352-chr10:22603196..22608426,8	MCF-7	breast:
2	chr10:22538623..22542248-chr10:22633707..22637357,3	MCF-7	breast:
3	chr10:22536525..22546833-chr10:22602936..22612723,20	MCF-7	breast:
4	chr10:22522942..22525681-chr10:22535705..22539316,3	K562	blood:

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000077327	Chromatin interaction
ENSG00000269897	Chromatin interaction

rs_ID	r²[population]
rs10508644	1.00[EUR][1000 genomes]
rs11012931	1.00[EUR][1000 genomes]
rs11012993	1.00[EUR][1000 genomes]
rs11012994	1.00[EUR][1000 genomes]
rs11012996	1.00[EUR][1000 genomes]
rs11012997	1.00[EUR][1000 genomes]
rs11012999	1.00[EUR][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12250894	1.00[EUR][1000 genomes]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	1.00[EUR][1000 genomes]
rs12256920	1.00[EUR][1000 genomes]
rs12258806	1.00[EUR][1000 genomes]
rs12265728	1.00[EUR][1000 genomes]
rs16922126	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922277	1.00[EUR][1000 genomes]
rs16922285	1.00[EUR][1000 genomes]
rs28665277	1.00[EUR][1000 genomes]
rs73598514	1.00[EUR][1000 genomes]
rs73598515	1.00[EUR][1000 genomes]
rs73598517	1.00[EUR][1000 genomes]
rs73598520	1.00[EUR][1000 genomes]
rs73598521	1.00[EUR][1000 genomes]
rs73598526	1.00[EUR][1000 genomes]
rs73598527	1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898929	1.00[EUR][1000 genomes]
rs7899794	1.00[EUR][1000 genomes]
rs7918856	1.00[EUR][1000 genomes]
rs7918879	1.00[EUR][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22534000-22540000	Weak transcription	Primary B cells from cord blood	blood
2	chr10:22534400-22540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:22534600-22540200	Weak transcription	HSMMtube	muscle
4	chr10:22534800-22539000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:22534800-22540200	Weak transcription	Brain Angular Gyrus	brain
6	chr10:22535000-22540000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:22535600-22539400	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:22535800-22539400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:22536600-22539200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:22536600-22539200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:22536600-22539200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:22536600-22539600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:22536600-22540200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:22536600-22540200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:22536600-22540200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:22536800-22539400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:22536800-22539800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:22536800-22540000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:22536800-22540000	Weak transcription	NHEK	skin
20	chr10:22536800-22540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:22536800-22540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:22536800-22540200	Weak transcription	Stomach Mucosa	stomach
23	chr10:22536800-22540200	Weak transcription	HSMM	muscle
24	chr10:22536800-22540200	Weak transcription	HUVEC	blood vessel
25	chr10:22536800-22540200	Weak transcription	NH-A	brain
26	chr10:22536800-22540200	Weak transcription	NHDF-Ad	bronchial
27	chr10:22536800-22540200	Weak transcription	NHLF	lung
28	chr10:22536800-22540400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:22537000-22539200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:22537000-22539600	Weak transcription	Osteobl	bone
31	chr10:22537000-22540200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:22537000-22540200	Weak transcription	HMEC	breast
33	chr10:22537200-22540000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:22537400-22539000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:22537400-22539200	Weak transcription	A549	lung
36	chr10:22537400-22539400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:22537600-22539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:22537600-22540200	Weak transcription	Hela-S3	cervix

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