Variant report

Variant	rs12258806
Chromosome Location	chr10:22731989-22731990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22731789..22734479-chr10:22734948..22737688,3	K562	blood:
2	chr10:22729078..22734479-chr10:22734589..22737865,6	K562	blood:
3	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
4	chr10:22608440..22611101-chr10:22731642..22733769,3	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012931	1.00[EUR][1000 genomes]
rs11012991	1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818252	1.00[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap]
rs12248190	1.00[CHB][hapmap]
rs12251592	1.00[EUR][1000 genomes]
rs12253013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256920	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262743	1.00[CHB][hapmap]
rs12265728	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922126	1.00[EUR][1000 genomes]
rs16922139	1.00[EUR][1000 genomes]
rs16922277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3004	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55869957	1.00[EUR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482214	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482215	1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs7079531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap]
rs73598513	1.00[ASN][1000 genomes]
rs73598514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598527	1.00[EUR][1000 genomes]
rs73598531	1.00[EUR][1000 genomes]
rs74121396	1.00[EUR][1000 genomes]
rs74123059	1.00[EUR][1000 genomes]
rs74123070	1.00[EUR][1000 genomes]
rs7893537	1.00[CHB][hapmap]
rs7898929	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7918856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919362	1.00[EUR][1000 genomes]
rs9783118	1.00[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22727400-22732600	Weak transcription	HSMM	muscle
2	chr10:22727600-22732000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:22727800-22733000	Weak transcription	Osteobl	bone
4	chr10:22728000-22732600	Weak transcription	GM12878-XiMat	blood
5	chr10:22728000-22732600	Weak transcription	HSMMtube	muscle
6	chr10:22728000-22733200	Weak transcription	Stomach Mucosa	stomach
7	chr10:22728000-22734200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:22728200-22732200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:22728200-22732200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:22730000-22732000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:22730600-22733000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:22731400-22732400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:22731800-22733200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links