Variant report

Variant	rs6482216
Chromosome Location	chr10:22744388-22744389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22715881..22717864-chr10:22742610..22744631,2	K562	blood:
2	chr10:22744328..22746155-chr10:22747975..22750272,2	K562	blood:
3	chr10:22633393..22635015-chr10:22743176..22745218,2	K562	blood:

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap]
rs10508646	0.87[EUR][1000 genomes]
rs10828309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap]
rs11012994	1.00[CHB][hapmap]
rs11012998	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	0.84[EUR][1000 genomes]
rs11013012	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812583	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251063	0.80[AMR][1000 genomes]
rs12251462	1.00[CEU][hapmap]
rs12256968	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258371	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap]
rs12262743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265492	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265728	1.00[CHB][hapmap]
rs16922285	1.00[CHB][hapmap]
rs3004	1.00[CHB][hapmap]
rs56269206	0.92[EUR][1000 genomes]
rs58253107	0.84[EUR][1000 genomes]
rs58554507	0.89[EUR][1000 genomes]
rs6482210	1.00[CEU][hapmap]
rs6482211	0.83[AMR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap]
rs6482214	1.00[CHB][hapmap]
rs6482218	0.87[EUR][1000 genomes]
rs7073403	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079531	1.00[CHB][hapmap]
rs7079548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7080269	1.00[ASN][1000 genomes]
rs73598518	1.00[ASN][1000 genomes]
rs73598529	0.92[EUR][1000 genomes]
rs74123046	0.92[EUR][1000 genomes]
rs74123047	0.92[EUR][1000 genomes]
rs7893537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap]
rs7911096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap]
rs7921007	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923274	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9663298	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22742800-22744800	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:22743000-22744400	Enhancers	K562	blood
3	chr10:22743200-22744600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:22743200-22744600	Enhancers	Primary B cells from cord blood	blood
5	chr10:22743400-22744600	Enhancers	GM12878-XiMat	blood
6	chr10:22743400-22748400	Weak transcription	HSMMtube	muscle
7	chr10:22743600-22744400	Enhancers	Psoas Muscle	Psoas
8	chr10:22743800-22752200	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:22744000-22752400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links