Variant report

Variant	rs12262743
Chromosome Location	chr10:22733682-22733683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22732732..22735397-chr10:22740047..22741677,2	K562	blood:
2	chr10:22731789..22734479-chr10:22734948..22737688,3	K562	blood:
3	chr10:22729078..22734479-chr10:22734589..22737865,6	K562	blood:
4	chr10:22608440..22611101-chr10:22731642..22733769,3	K562	blood:
5	chr10:22732081..22734232-chr10:22738993..22741677,2	K562	blood:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap]
rs10508646	0.92[EUR][1000 genomes]
rs10828309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap]
rs11012994	1.00[CHB][hapmap]
rs11012998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013007	0.89[EUR][1000 genomes]
rs11013012	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812583	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251462	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12256968	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258371	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap]
rs12265492	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265728	1.00[CHB][hapmap]
rs16922285	1.00[CHB][hapmap]
rs3004	1.00[CHB][hapmap]
rs56269206	0.97[EUR][1000 genomes]
rs58253107	0.89[EUR][1000 genomes]
rs58554507	0.94[EUR][1000 genomes]
rs6482210	1.00[CEU][hapmap]
rs6482211	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6482212	1.00[CHB][hapmap]
rs6482213	1.00[CHB][hapmap]
rs6482214	1.00[CHB][hapmap]
rs6482216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482218	0.92[EUR][1000 genomes]
rs7073403	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079531	1.00[CHB][hapmap]
rs7079548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7080269	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73598518	1.00[ASN][1000 genomes]
rs73598529	0.97[EUR][1000 genomes]
rs74123046	0.97[EUR][1000 genomes]
rs74123047	0.97[EUR][1000 genomes]
rs7893537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap]
rs7911096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap]
rs7921007	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923274	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9663298	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22728000-22734200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:22732000-22733800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:22733000-22734200	Weak transcription	HepG2	liver
4	chr10:22733200-22734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links