Variant report

Variant	rs3004
Chromosome Location	chr10:22724472-22724473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22716047..22718111-chr10:22722853..22724530,2	MCF-7	breast:
2	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
3	chr10:22614072..22616553-chr10:22723702..22726327,3	MCF-7	breast:
4	chr10:22705475..22707462-chr10:22724469..22726250,2	MCF-7	breast:
5	chr10:22627231..22631801-chr10:22722280..22727319,10	MCF-7	breast:
6	chr10:22721771..22724573-chr10:22724819..22726354,2	K562	blood:
7	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
8	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10508644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10828306	0.81[EUR][1000 genomes]
rs10828309	1.00[CHB][hapmap]
rs11012937	0.81[EUR][1000 genomes]
rs11012952	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11012962	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012972	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs11012977	0.81[EUR][1000 genomes]
rs11012978	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11012980	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012989	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11012991	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012993	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11012994	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11012996	1.00[ASN][1000 genomes]
rs11012997	1.00[ASN][1000 genomes]
rs11012999	1.00[ASN][1000 genomes]
rs11013010	1.00[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs11552445	0.81[EUR][1000 genomes]
rs11814745	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11817311	0.81[EUR][1000 genomes]
rs11817873	1.00[EUR][1000 genomes]
rs12241555	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12243038	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12246511	0.87[EUR][1000 genomes]
rs12247258	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs12248190	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12251462	1.00[CHD][hapmap]
rs12253013	1.00[ASN][1000 genomes]
rs12253249	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12256920	1.00[ASN][1000 genomes]
rs12258806	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12261027	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs12262743	1.00[CHB][hapmap]
rs12264748	0.94[EUR][1000 genomes]
rs12265492	1.00[CHD][hapmap]
rs12265728	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1342317	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1418377	0.87[EUR][1000 genomes]
rs1539322	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16922217	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16922235	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16922277	1.00[ASN][1000 genomes]
rs16922285	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2066354	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2363568	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs28496146	0.81[EUR][1000 genomes]
rs57283505	0.81[EUR][1000 genomes]
rs57753470	0.81[EUR][1000 genomes]
rs57847001	0.81[EUR][1000 genomes]
rs58046964	0.81[EUR][1000 genomes]
rs58340985	0.81[EUR][1000 genomes]
rs58552927	0.87[EUR][1000 genomes]
rs60317615	0.94[EUR][1000 genomes]
rs60602527	0.81[EUR][1000 genomes]
rs60837021	0.81[EUR][1000 genomes]
rs6482209	1.00[CEU][hapmap]
rs6482210	1.00[CHD][hapmap]
rs6482212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs6482213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482216	1.00[CHB][hapmap]
rs6482217	0.82[EUR][1000 genomes]
rs7068522	0.94[EUR][1000 genomes]
rs7069337	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7070356	1.00[CEU][hapmap]
rs7071015	1.00[CEU][hapmap]
rs7072212	0.81[EUR][1000 genomes]
rs7073377	1.00[CEU][hapmap]
rs7074430	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7074847	1.00[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7077927	1.00[CEU][hapmap]
rs7078252	1.00[CEU][hapmap]
rs7078770	0.94[EUR][1000 genomes]
rs7079531	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079548	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7086239	1.00[CEU][hapmap]
rs7086718	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7087672	0.81[EUR][1000 genomes]
rs7089276	0.88[EUR][1000 genomes]
rs7092483	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7094297	0.81[EUR][1000 genomes]
rs7096866	0.81[EUR][1000 genomes]
rs7097932	0.94[EUR][1000 genomes]
rs7099268	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7099308	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7358106	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7358250	0.81[EUR][1000 genomes]
rs73596598	0.81[EUR][1000 genomes]
rs73596599	0.81[EUR][1000 genomes]
rs73596601	0.81[EUR][1000 genomes]
rs73598505	0.81[EUR][1000 genomes]
rs73598507	0.81[EUR][1000 genomes]
rs73598508	0.81[EUR][1000 genomes]
rs73598512	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73598513	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598514	1.00[ASN][1000 genomes]
rs73598515	1.00[ASN][1000 genomes]
rs73598517	1.00[ASN][1000 genomes]
rs73598520	1.00[ASN][1000 genomes]
rs73598521	1.00[ASN][1000 genomes]
rs73598526	1.00[ASN][1000 genomes]
rs7893132	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7893537	1.00[CHB][hapmap]
rs7895113	0.87[EUR][1000 genomes]
rs7895751	0.81[EUR][1000 genomes]
rs7898929	1.00[ASN][1000 genomes]
rs7899794	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7901797	0.87[EUR][1000 genomes]
rs7904006	0.87[EUR][1000 genomes]
rs7904538	0.81[EUR][1000 genomes]
rs7904821	0.94[EUR][1000 genomes]
rs7907396	0.87[EUR][1000 genomes]
rs7907844	0.81[EUR][1000 genomes]
rs7909597	0.81[EUR][1000 genomes]
rs7911096	1.00[CHB][hapmap]
rs7914254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914800	0.94[EUR][1000 genomes]
rs7918271	1.00[CEU][hapmap]
rs7918856	1.00[ASN][1000 genomes]
rs7918879	1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7919200	0.81[EUR][1000 genomes]
rs7920038	1.00[CHD][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9663254	0.94[EUR][1000 genomes]
rs9665348	0.94[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22714600-22725200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:22717000-22725400	Weak transcription	Placenta	Placenta
3	chr10:22718000-22725400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:22719200-22724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:22719200-22725400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:22719200-22725400	Weak transcription	Psoas Muscle	Psoas
7	chr10:22719400-22725200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:22720000-22725200	Weak transcription	GM12878-XiMat	blood
9	chr10:22722000-22725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:22722200-22725200	Enhancers	HSMM	muscle
11	chr10:22722200-22725400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:22722400-22724600	Enhancers	Osteobl	bone
13	chr10:22722600-22724600	Enhancers	NH-A	brain
14	chr10:22722600-22725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:22722600-22725400	Enhancers	NHLF	lung
16	chr10:22722800-22725200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:22723000-22725200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:22723000-22725200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:22723200-22725400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:22723200-22725400	Enhancers	HMEC	breast
22	chr10:22723400-22724800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:22723400-22725200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:22723400-22725200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:22723400-22725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:22723600-22724600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:22723600-22725200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:22723600-22725200	Weak transcription	Adipose Nuclei	Adipose
29	chr10:22723600-22725400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:22723600-22725600	Enhancers	Placenta Amnion	Placenta Amnion
31	chr10:22723800-22725200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:22723800-22725200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:22723800-22725200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:22723800-22725200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:22723800-22725200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:22723800-22725200	Weak transcription	Stomach Mucosa	stomach
37	chr10:22723800-22725200	Weak transcription	HUVEC	blood vessel
38	chr10:22723800-22725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:22723800-22725800	Weak transcription	A549	lung
40	chr10:22723800-22726000	Weak transcription	Hela-S3	cervix
41	chr10:22724200-22725600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:22724400-22724600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:22724400-22724600	Enhancers	Pancreas	Pancrea
44	chr10:22724400-22724600	Enhancers	HSMMtube	muscle
45	chr10:22724400-22724600	Flanking Active TSS	NHDF-Ad	bronchial
46	chr10:22724400-22724600	Enhancers	NHEK	skin
47	chr10:22724400-22725200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:22724400-22725200	Enhancers	Fetal Brain Female	brain
49	chr10:22724400-22725200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr10:22724400-22725400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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